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Electronic Structure and Spectroscopy of Nucleic Acid Bases: Ionization Energies, Ionization-Induced Structural Changes, and Photoelectron Spectra
被引:93
作者:
Bravaya, Ksenia B.
[1
]
Kostko, Oleg
[2
]
Dolgikh, Stanislav
[1
]
Landau, Arie
[1
]
Ahmed, Musahid
[2
]
Krylov, Anna I.
[1
]
机构:
[1] Univ So Calif, Dept Chem, Los Angeles, CA 90089 USA
[2] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Chem Sci, Berkeley, CA 94720 USA
基金:
美国国家科学基金会;
关键词:
INFRARED-LASER SPECTROSCOPY;
MOLECULAR-ORBITAL METHODS;
COUPLED-CLUSTER METHODS;
BASIS-SETS;
RADICAL CATIONS;
PROTON-TRANSFER;
DNA BASES;
AB-INITIO;
ULTRAVIOLET PHOTOELECTRON;
HELIUM NANODROPLETS;
D O I:
10.1021/jp1063726
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
We report high-level ab initio calculations and single-photon ionization mass spectrometry study of ionization of adenine (A), thymine (T), cytosine (C), and guanine (G). For thymine and adenine, only the lowest-energy tautomers were considered, whereas for cytosine and guanine we characterized the five lowest-energy tautomeric forms. The first adiabatic and several vertical ionization energies were computed using the equation-of-motion coupled-cluster method for ionization potentials with single and double substitutions. Equilibrium structures of the cationic ground states were characterized by DFT with the omega B97X-D functional. The ionization-induced geometry changes of the bases are consistent with the shapes of the corresponding molecular orbitals. For the lowest-energy tautomers, the magnitude of the structural relaxation decreases in the following series, G > C > A > T, the respective relaxation energies being 0.41, 0.32, 0.25, and 0.20 eV. The computed adiabatic ionization energies (8.13, 8.89, 8.51-8.67, and 7.75-7.87 eV for A, T, C, and G, respectively) agree well with the onsets of the photoionization efficiency (PIE) curves (8.20 +/- 0.05, 8.95 +/- 0.05, 8.60 +/- 0.05, and 7.75 +/- 0.05 eV). Vibrational progressions for the S-0-D-0 vibronic bands computed within double-harmonic approximation with Duschinsky rotations are compared with previously reported experimental photoelectron spectra and differentiated PIE curves.
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页码:12305 / 12317
页数:13
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