Electronic Structure and Spectroscopy of Nucleic Acid Bases: Ionization Energies, Ionization-Induced Structural Changes, and Photoelectron Spectra

被引:93
作者
Bravaya, Ksenia B. [1 ]
Kostko, Oleg [2 ]
Dolgikh, Stanislav [1 ]
Landau, Arie [1 ]
Ahmed, Musahid [2 ]
Krylov, Anna I. [1 ]
机构
[1] Univ So Calif, Dept Chem, Los Angeles, CA 90089 USA
[2] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Chem Sci, Berkeley, CA 94720 USA
基金
美国国家科学基金会;
关键词
INFRARED-LASER SPECTROSCOPY; MOLECULAR-ORBITAL METHODS; COUPLED-CLUSTER METHODS; BASIS-SETS; RADICAL CATIONS; PROTON-TRANSFER; DNA BASES; AB-INITIO; ULTRAVIOLET PHOTOELECTRON; HELIUM NANODROPLETS;
D O I
10.1021/jp1063726
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We report high-level ab initio calculations and single-photon ionization mass spectrometry study of ionization of adenine (A), thymine (T), cytosine (C), and guanine (G). For thymine and adenine, only the lowest-energy tautomers were considered, whereas for cytosine and guanine we characterized the five lowest-energy tautomeric forms. The first adiabatic and several vertical ionization energies were computed using the equation-of-motion coupled-cluster method for ionization potentials with single and double substitutions. Equilibrium structures of the cationic ground states were characterized by DFT with the omega B97X-D functional. The ionization-induced geometry changes of the bases are consistent with the shapes of the corresponding molecular orbitals. For the lowest-energy tautomers, the magnitude of the structural relaxation decreases in the following series, G > C > A > T, the respective relaxation energies being 0.41, 0.32, 0.25, and 0.20 eV. The computed adiabatic ionization energies (8.13, 8.89, 8.51-8.67, and 7.75-7.87 eV for A, T, C, and G, respectively) agree well with the onsets of the photoionization efficiency (PIE) curves (8.20 +/- 0.05, 8.95 +/- 0.05, 8.60 +/- 0.05, and 7.75 +/- 0.05 eV). Vibrational progressions for the S-0-D-0 vibronic bands computed within double-harmonic approximation with Duschinsky rotations are compared with previously reported experimental photoelectron spectra and differentiated PIE curves.
引用
收藏
页码:12305 / 12317
页数:13
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