Pedobacter koreensis sp nov., isolated from fresh water

被引:33
作者
Baik, Keun Sik
Park, Yoon-Dong
Kim, Mi Sun
Park, Seong Chan
Moon, Eun Young
Rhee, Moon Soo
Choi, Ji Hyeok
Seong, Chi Nam [1 ]
机构
[1] Sunchon Natl Univ, Dept Biol, Coll Nat Sci, Sunchon 540742, South Korea
[2] Univ Illinois, Coll Med, Infect Dis Sect, Dept Med, Chicago, IL 60612 USA
[3] Seoul Natl Univ, Sch Biol Sci, Seoul 151742, South Korea
[4] Korea Res Inst Biosci & Biotechnol, Taejon 305600, South Korea
[5] Paru Co Ltd, Sunchon 540742, South Korea
关键词
D O I
10.1099/ijs.0.65186-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A motile, rod-shaped bacterium, designated strain WPCB189(T), was isolated from fresh water collected from the Woopo wetland (Republic of Korea). The cells were found to be Gram-negative, aerobic and catalase- and oxidase-positive. A phylogenetic analysis based on 16S rRNA gene sequences showed that this isolate forms a lineage within the genus Pedobacter, showing sequence similarities of 89.7-96.4% with respect to recognized species of the genus, and represents a novel member of this genus. The major fatty acids were iso-C-15:0 2-OH and/or C-16: (1)omega 7c (summed feature 3, 29.7%), iso-C-15:0 (26.4%) and iso-C(17:1)3-OH (10.1%). The DNA G + C content was 38.0 mol%. On thE basis of data obtained from this polyphasic taxonomic study, strain WPCB189(T) represents a novel species of the genus Pedobacter, for which the name Pedobacter koreensis sp. nov. is proposed. The type strain is WPCB189(T) (=KCTC 12536(T) =NBRC 101153(T)).
引用
收藏
页码:2079 / 2083
页数:5
相关论文
共 20 条
[1]   Nocardiopsis kunsanensis sp nov., a moderately halophilic actinomycete isolated from a saltern [J].
Chun, J ;
Bae, KS ;
Moon, EY ;
Jung, SO ;
Lee, HK ;
Kim, SJ .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 :1909-1913
[2]   A PHYLOGENETIC ANALYSIS OF THE GENUS NOCARDIA WITH 16S RIBOSOMAL-RNA GENE-SEQUENCES [J].
CHUN, JS ;
GOODFELLOW, M .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1995, 45 (02) :240-245
[3]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[4]   CONSTRUCTION OF PHYLOGENETIC TREES [J].
FITCH, WM ;
MARGOLIASH, E .
SCIENCE, 1967, 155 (3760) :279-+
[5]   Pedobacter aquatilis sp nov., isolated from drinking water, and emended description of the genus Pedobacter [J].
Gallego, Virginia ;
Garcia, Maria Teresa ;
Ventosa, Antonio .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2006, 56 :1853-1858
[6]   Pedobacter roseus sp nov., isolated from a hypertrophic pond, and emended description of the genus Pedobacter [J].
Hwang, Chung Yeon ;
Choi, Dong Han ;
Cho, Byung Cheol .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2006, 56 :1831-1836
[7]  
Jukes TH, 1969, MAMMALIAN PROTEIN ME, P21, DOI [DOI 10.1016/B978-1-4832-3211-9.50009-7, DOI 10.1093/BIOINFORMATICS/BTM404]
[8]   IDENTIFICATION OF PSEUDOMONAS-PYOCYANEA BY THE OXIDASE REACTION [J].
KOVACS, N .
NATURE, 1956, 178 (4535) :703-703
[9]   Pedobacter cryoconitis sp nov., a facultative psychrophile from alpine glacier cryoconite [J].
Margesin, R ;
Spröer, C ;
Schumann, P ;
Schinner, F .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2003, 53 :1291-1296
[10]   DETERMINATION OF BASE COMPOSITION OF DEOXYRIBONUCLEIC ACID FROM ITS THERMAL DENATURATION TEMPERATURE [J].
MARMUR, J ;
DOTY, P .
JOURNAL OF MOLECULAR BIOLOGY, 1962, 5 (01) :109-&