JOY: protein sequence-structure representation and analysis

被引：344

作者：

Mizuguchi, K

Deane, CM

Blundell, TL

Johnson, MS

Overingon, JP

机构：

[1] Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

[2] Turku Univ, Dept Biochem, Turku, Finland

[3] Pfizer Ltd, Cent Res, Computat Chem & Prot Crystallog, Sandwich CT13 9NJ, Kent, England

来源：

BIOINFORMATICS | 1998年 / 14卷 / 07期

关键词：

D O I：

10.1093/bioinformatics/14.7.617

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Motivation: JOY is a program to annotate protein sequence alignments with three-dimensional (3D) structural features. It was developed to display 3D structural information in a sequence alignment and to help understand the conservation of amino acids in their specific local environments. Results: The JOY representation now constitutes an essential part of the two databases of protein structure alignments. HOMSTRAD (http://www-cryst.bioc.cam.ac.uk/similar to homstrad) and CAMPASS (http://www-cryst.bioc.cam.ac.uk/similar to campass). It has also been successfully used for identifying distant evolutionary relationships. Availability: The program can be obtained via anonymous ftp from torsa.bioc.cam.ac.uk fi om the directory /pub/joy/. The address for the JOY sewer is http://www-cryst. bioc.cam.ac.uk/cgi-bin/joy.cgi. Contact: kenji@cryst.bioc.cam.ac.uk.

引用

页码：617 / 623

页数：7

共 28 条

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