TetraploidMap: Construction of a linkage map in autotetraploid species

被引：58

作者：

Hackett, CA ^{[1
]}

Luo, ZW

机构：

[1] Scottish Crop Res Inst, Biomath & Stat Scotland, Dundee DD2 5DE, Scotland

[2] Univ Birmingham, Sch Biosci, Birmingham B15 2TT, W Midlands, England

来源：

JOURNAL OF HEREDITY | 2003年 / 94卷 / 04期

基金：

英国生物技术与生命科学研究理事会;

关键词：

D O I：

10.1093/jhered/esg066

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

TetraploidMap is a suite of Fortran 90 routines run from Microsoft Windows with a text-based input and output. TetraploidMap enables the user to assemble a linkage map from dominant and codominant (multiallelic) marker loci scored for the parents and full-sib progeny of a cross in an autotetraploid species. It includes routines for the inference of the parental genotypes, identification of linkage groups, two-point analysis to estimate the recombination frequency and LOD score between all pairs of marker in a linkage group, and locus ordering by simulated annealing.

引用

页码：358 / 359

页数：2

共 15 条

[1]

Anderson M.R., 1973, CLUSTER ANAL APPL

[2]

[Anonymous], JOINMAP VERSION 2 0

[3]

CALLEN DF, 1993, AM J HUM GENET, V52, P922

[4] Linkage in the tetraploid Primula sinensis. [J].

De Winton, D ;

Haldane, JBS .

JOURNAL OF GENETICS, 1931, 24 (01) :121-144

[5] THE THEORY OF LINKAGE IN POLYSOMIC INHERITANCE [J].

FISHER, RA .

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES, 1947, 233 (594) :55-87

[6] Linkage analysis in tetraploid species: a simulation study [J].

Hackett, CA ;

Bradshaw, JE ;

Meyer, RC ;

McNicol, JW ;

Milbourne, D ;

Waugh, R .

GENETICAL RESEARCH, 1998, 71 (02) :143-154

[7]

HACKETT CA, IN PRESS THEOR APPL

[8] Polylink: to support two-point linkage analysis in autotetraploids [J].

He, Y ;

Xu, XM ;

Tobutt, KR ;

Ridout, MS .

BIOINFORMATICS, 2001, 17 (08) :740-741

[9] Predicting parental genotypes and gene segregation for tetrasomic inheritance [J].

Luo, ZW ;

Hackett, CA ;

Bradshaw, JE ;

McNicol, JW ;

Milbourne, D .

THEORETICAL AND APPLIED GENETICS, 2000, 100 (07) :1067-1073

[10]

Luo ZW, 2001, GENETICS, V157, P1369

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