CNVs: Harbingers of a Rare Variant Revolution in Psychiatric Genetics

被引:592
作者
Malhotra, Dheeraj [1 ,2 ]
Sebat, Jonathan [1 ,2 ,3 ,4 ]
机构
[1] Univ Calif San Diego, Beyster Ctr Genom Psychiat Dis, La Jolla, CA 92093 USA
[2] Univ Calif San Diego, Dept Psychiat, La Jolla, CA USA
[3] Univ Calif San Diego, Dept Cellular Mol & Mol Med, La Jolla, CA USA
[4] Univ Calif San Diego, Inst Genom Med, La Jolla, CA USA
关键词
COPY-NUMBER VARIATION; AUTISM SPECTRUM DISORDERS; VASOACTIVE-INTESTINAL-PEPTIDE; DE-NOVO CNVS; BIPOLAR-DISORDER; STRUCTURAL VARIATION; RECURRENT REARRANGEMENTS; MICRODELETION SYNDROME; MENTAL-RETARDATION; HIGH-RISK;
D O I
10.1016/j.cell.2012.02.039
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The genetic bases of neuropsychiatric disorders are beginning to yield to scientific inquiry. Genome-wide studies of copy number variation (CNV) have given rise to a new understanding of disease etiology, bringing rare variants to the forefront. A proportion of risk for schizophrenia, bipolar disorder, and autism can be explained by rare mutations. Such alleles arise by de novo mutation in the individual or in recent ancestry. Alleles can have specific effects on behavioral and neuroanatomical traits; however, expressivity is variable, particularly for neuropsychiatric phenotypes. Knowledge from CNV studies reflects the nature of rare alleles in general and will serve as a guide as we move forward into a new era of whole-genome sequencing.
引用
收藏
页码:1223 / 1241
页数:19
相关论文
共 160 条
[1]   APPLICATIONS OF NEXT-GENERATION SEQUENCING Genome structural variation discovery and genotyping [J].
Alkan, Can ;
Coe, Bradley P. ;
Eichler, Evan E. .
NATURE REVIEWS GENETICS, 2011, 12 (05) :363-375
[2]   Homozygosity mapping: One more tool in the clinical geneticist's toolbox [J].
Alkuraya, Fowzan S. .
GENETICS IN MEDICINE, 2010, 12 (04) :236-239
[3]   A haplotype map of the human genome [J].
Altshuler, D ;
Brooks, LD ;
Chakravarti, A ;
Collins, FS ;
Daly, MJ ;
Donnelly, P ;
Gibbs, RA ;
Belmont, JW ;
Boudreau, A ;
Leal, SM ;
Hardenbol, P ;
Pasternak, S ;
Wheeler, DA ;
Willis, TD ;
Yu, FL ;
Yang, HM ;
Zeng, CQ ;
Gao, Y ;
Hu, HR ;
Hu, WT ;
Li, CH ;
Lin, W ;
Liu, SQ ;
Pan, H ;
Tang, XL ;
Wang, J ;
Wang, W ;
Yu, J ;
Zhang, B ;
Zhang, QR ;
Zhao, HB ;
Zhao, H ;
Zhou, J ;
Gabriel, SB ;
Barry, R ;
Blumenstiel, B ;
Camargo, A ;
Defelice, M ;
Faggart, M ;
Goyette, M ;
Gupta, S ;
Moore, J ;
Nguyen, H ;
Onofrio, RC ;
Parkin, M ;
Roy, J ;
Stahl, E ;
Winchester, E ;
Ziaugra, L ;
Shen, Y .
NATURE, 2005, 437 (7063) :1299-1320
[4]   AUTISM AS A STRONGLY GENETIC DISORDER - EVIDENCE FROM A BRITISH TWIN STUDY [J].
BAILEY, A ;
LECOUTEUR, A ;
GOTTESMAN, I ;
BOLTON, P ;
SIMONOFF, E ;
YUZDA, E ;
RUTTER, M .
PSYCHOLOGICAL MEDICINE, 1995, 25 (01) :63-77
[5]   Molecular cytogenetic analysis and resequencing of Contactin Associated Protein-Like 2 in autism spectrum disorders [J].
Bakkaloglu, Betul ;
O'Roak, Brian J. ;
Louvi, Angeliki ;
Gupta, Abha R. ;
Abelson, Jesse E. ;
Morgan, Thomas M. ;
Chawarska, Katarzyna ;
Klin, Ami ;
Ercan-Sencicek, A. Gulhan ;
Stillman, Althea A. ;
Tanriover, Gamze ;
Abrahams, Brett S. ;
Duvall, Jackie A. ;
Robbins, Elissa M. ;
Geschwind, Daniel H. ;
Biederer, Thomas ;
Gunel, Murat ;
Lifton, Richard P. ;
State, Matthew W. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2008, 82 (01) :165-173
[6]   Expanding the clinical phenotype of the 3q29 microdeletion syndrome and characterization of the reciprocal microduplication [J].
Ballif, Blake C. ;
Theisen, Aaron ;
Coppinger, Justine ;
Gowans, Gordon C. ;
Hersh, Joseph H. ;
Madan-Khetarpal, Suneeta ;
Schmidt, Karen R. ;
Tervo, Raymond ;
Escobar, Luis F. ;
Friedrich, Christopher A. ;
McDonald, Marie ;
Campbell, Lindsey ;
Ming, Jeffrey E. ;
Zackai, Elaine H. ;
Bejjani, Bassem A. ;
Shaffer, Lisa G. .
MOLECULAR CYTOGENETICS, 2008, 1 (1)
[7]   LINE-1 Elements in Structural Variation and Disease [J].
Beck, Christine R. ;
Luis Garcia-Perez, Jose ;
Badge, Richard M. ;
Moran, John V. .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 12, 2011, 12 :187-215
[8]   Mutations in the SHANK2 synaptic scaffolding gene in autism spectrum disorder and mental retardation [J].
Berkel, Simone ;
Marshall, Christian R. ;
Weiss, Birgit ;
Howe, Jennifer ;
Roeth, Ralph ;
Moog, Ute ;
Endris, Volker ;
Roberts, Wendy ;
Szatmari, Peter ;
Pinto, Dalila ;
Bonin, Michael ;
Riess, Angelika ;
Engels, Hartmut ;
Sprengel, Rolf ;
Scherer, Stephen W. ;
Rappold, Gudrun A. .
NATURE GENETICS, 2010, 42 (06) :489-491
[9]   Extending the phenotype of recurrent rearrangements of 16p11.2: Deletions in mentally retarded patients without autism and in normal individuals [J].
Bijlsma, E. K. ;
Gijsbers, A. C. J. ;
Schuurs-Hoeijmakers, J. H. M. ;
van Haeringen, A. ;
van de Putte, D. E. Fransen ;
Anderlid, B. -M. ;
Lundin, J. ;
Lapunzina, P. ;
Perez Jurado, L. A. ;
Delle Chiaie, B. ;
Loeys, B. ;
Menten, B. ;
Oostra, A. ;
Verhelst, H. ;
Amor, D. J. ;
Bruno, D. L. ;
van Essen, A. J. ;
Hordijk, R. ;
Sikkema-Raddatz, B. ;
Verbruggen, K. T. ;
Jongmans, M. C. J. ;
Pfundt, R. ;
Reeser, H. M. ;
Breuning, M. H. ;
Ruivenkamp, C. A. L. .
EUROPEAN JOURNAL OF MEDICAL GENETICS, 2009, 52 (2-3) :77-87
[10]   Common and rare variants in multifactorial susceptibility to common diseases [J].
Bodmer, Walter ;
Bonilla, Carolina .
NATURE GENETICS, 2008, 40 (06) :695-701