Grasping at molecular interactions and genetic networks in Drosophila melanogaster using FlyNets, an Internet database

被引:87
作者
Sanchez, C
Lachaize, C
Janody, F
Bellon, B
Röder, L
Euzenat, J
Rechenmann, F
Jacq, B
机构
[1] IBDM, Lab Genet & Physiol Dev, CNRS, Case 907, F-13288 Marseille 09, France
[2] INRIA Rhone Alpes, F-38330 Montbonnot St Martin, France
[3] Univ Aix Marseille 1, Atelier Bioinformat, F-13331 Marseille 03, France
关键词
D O I
10.1093/nar/27.1.89
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
FlyNets (http://gifts.univ-mrs.fr/FlyNets/FlyNets page,html) is a WWW database describing molecular interactions (protein-DNA, protein-RNA and protein-protein) in the fly Drosophila melanogaster, It is composed of two parts, as follows. (i) FlyNets-base is a specialized database which focuses on molecular interactions involved in Drosophila development. The information content of FlyNets-base is distributed among several specific lines arranged according to a GenBank-like format and grouped into five thematic zones to improve human readability. The FlyNets database achieves a high level of integration with other databases such as FlyBase, EMBL, GenBank and SWISS-PROT through numerous hyperlinks, (ii) FlyNets-list is a very simple and more general databank, the long-term goal of which is to report on any published molecular interaction occuring in the fly, giving direct web access to corresponding abstracts in Medline and in FlyBase, In the context of genome projects, databases describing molecular interactions and genetic networks will provide a link at the functional level between the genome, the proteome and the transcriptome worlds of different organisms. Interaction databases therefore aim at describing the contents, structure, function and behaviour of what we herein define as the interactome world.
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页码:89 / 94
页数:6
相关论文
共 21 条
[1]  
ABOLA EE, 1988, COMPUTATIONAL MOL BI, P69
[2]   The Drosophila teashirt homeotic protein is a DNA-binding protein and modulo, a HOM-C regulated modifier of variegation, is a likely candidate for being a direct target gene [J].
Alexandre, E ;
Graba, Y ;
Fasano, L ;
Gallet, A ;
Perrin, L ;
DeZulueta, P ;
Pradel, J ;
Kerridge, S ;
Jacq, B .
MECHANISMS OF DEVELOPMENT, 1996, 59 (02) :191-204
[3]   The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998 [J].
Bairoch, A ;
Apweiler, R .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :38-42
[4]   The PIR-international Protein Sequence Database [J].
Barker, WC ;
Garavelli, JS ;
Haft, DH ;
Hunt, LT ;
Marzec, CR ;
Orcutt, BC ;
Srinivasarao, GY ;
Yeh, LSL ;
Ledley, RS ;
Mewes, HW ;
Pfeiffer, F ;
Tsugita, A .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :27-32
[5]   GenBank [J].
Benson, DA ;
Boguski, MS ;
Lipman, DJ ;
Ostell, J ;
Ouellette, BFF .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :1-7
[6]  
EUZENAT J, 1997, P 5 INT C INT SYST M, P108
[7]   THE GENE TEASHIRT IS REQUIRED FOR THE DEVELOPMENT OF DROSOPHILA EMBRYONIC TRUNK SEGMENTS AND ENCODES A PROTEIN WITH WIDELY SPACED ZINC FINGER MOTIFS [J].
FASANO, L ;
RODER, L ;
CORE, N ;
ALEXANDRE, E ;
VOLA, C ;
JACQ, B ;
KERRIDGE, S .
CELL, 1991, 64 (01) :63-79
[8]   Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens [J].
FromontRacine, M ;
Rain, JC ;
Legrain, P .
NATURE GENETICS, 1997, 16 (03) :277-282
[9]  
Gelbart WM, 1998, NUCLEIC ACIDS RES, V26, P85
[10]  
Goto S, 1996, PACIFIC SYMPOSIUM ON BIOCOMPUTING '97, P175