Recent advances in the genetics of RA susceptibility

被引:129
作者
Bowes, J. [1 ]
Barton, A. [1 ]
机构
[1] Univ Manchester, ARC EU, Manchester, Lancs, England
关键词
rheumatoid arthritis; GWAS; candidate; association; review;
D O I
10.1093/rheumatology/ken005
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
RA is a common autoimmune disease with a complex aetiology in which genetic and environmental factors contribute to disease. The genetic component of RA is largely undefined and, up until very recently, there were only two reproducible associations. The strongest of these associations is of genes within the HLA region, particularly the HLA-DRB1 gene. A second, more modest, association identified has been of the protein tyrosine phosphatase non-receptor 22 (PTPN22) gene. Advances in genotyping technology have facilitated the application of whole genome association approaches to identify disease causal variants. This, coupled with the availability of large case and control collections has enabled the identification of low-to-moderate risk loci. These newer study designs combined with traditional linkage and association studies have accelerated the identification of novel risk loci. The past few months alone have witnessed the identification of three new RA risk loci. In this review, we aim to give an update on recent progress in RA genetics, focusing mainly on the identification of novel loci.
引用
收藏
页码:399 / 402
页数:4
相关论文
共 47 条
[1]   Evaluating coverage of genome-wide association studies [J].
Barrett, Jeffrey C. ;
Cardon, Lon R. .
NATURE GENETICS, 2006, 38 (06) :659-662
[2]   The R620W polymorphism of the protein tyrosine phosphatase PTPN22 is not associated with multiple sclerosis [J].
Begovich, AB ;
Caillier, SJ ;
Alexander, HC ;
Penko, JM ;
Hauser, SL ;
Barcellos, LF ;
Oksenberg, JR .
AMERICAN JOURNAL OF HUMAN GENETICS, 2005, 76 (01) :184-187
[3]   A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis [J].
Begovich, AB ;
Carlton, VEH ;
Honigberg, LA ;
Schrodi, SJ ;
Chokkalingam, AP ;
Alexander, HC ;
Ardlie, KG ;
Huang, QQ ;
Smith, AM ;
Spoerke, JM ;
Conn, MT ;
Chang, M ;
Chang, SYP ;
Saiki, RK ;
Catanese, JJ ;
Leong, DU ;
Garcia, VE ;
McAllister, LB ;
Jeffery, DA ;
Lee, AT ;
Batliwalla, F ;
Remmers, E ;
Criswell, LA ;
Seldin, MF ;
Kastner, DL ;
Amos, CI ;
Sninsky, JJ ;
Gregersen, PK .
AMERICAN JOURNAL OF HUMAN GENETICS, 2004, 75 (02) :330-337
[4]   The ubiquitin-modifying enzyme A20 is required for termination of Toll-like receptor responses [J].
Boone, DL ;
Turer, EE ;
Lee, EG ;
Ahmad, RC ;
Wheeler, MT ;
Tsui, C ;
Hurley, P ;
Chien, M ;
Chai, S ;
Hitotsumatsu, O ;
McNally, E ;
Pickart, C ;
Ma, A .
NATURE IMMUNOLOGY, 2004, 5 (10) :1052-1060
[5]   A functional variant of lymphoid tyrosine phosphatase is associated with type I diabetes [J].
Bottini, N ;
Musumeci, L ;
Alonso, A ;
Rahmouni, S ;
Nika, K ;
Rostamkhani, M ;
MacMurray, J ;
Meloni, GF ;
Lucarelli, P ;
Pellecchia, M ;
Eisenbarth, GS ;
Comings, D ;
Mustelin, T .
NATURE GENETICS, 2004, 36 (04) :337-338
[6]   Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls [J].
Burton, Paul R. ;
Clayton, David G. ;
Cardon, Lon R. ;
Craddock, Nick ;
Deloukas, Panos ;
Duncanson, Audrey ;
Kwiatkowski, Dominic P. ;
McCarthy, Mark I. ;
Ouwehand, Willem H. ;
Samani, Nilesh J. ;
Todd, John A. ;
Donnelly, Peter ;
Barrett, Jeffrey C. ;
Davison, Dan ;
Easton, Doug ;
Evans, David ;
Leung, Hin-Tak ;
Marchini, Jonathan L. ;
Morris, Andrew P. ;
Spencer, Chris C. A. ;
Tobin, Martin D. ;
Attwood, Antony P. ;
Boorman, James P. ;
Cant, Barbara ;
Everson, Ursula ;
Hussey, Judith M. ;
Jolley, Jennifer D. ;
Knight, Alexandra S. ;
Koch, Kerstin ;
Meech, Elizabeth ;
Nutland, Sarah ;
Prowse, Christopher V. ;
Stevens, Helen E. ;
Taylor, Niall C. ;
Walters, Graham R. ;
Walker, Neil M. ;
Watkins, Nicholas A. ;
Winzer, Thilo ;
Jones, Richard W. ;
McArdle, Wendy L. ;
Ring, Susan M. ;
Strachan, David P. ;
Pembrey, Marcus ;
Breen, Gerome ;
St Clair, David ;
Caesar, Sian ;
Gordon-Smith, Katherine ;
Jones, Lisa ;
Fraser, Christine ;
Green, Elain K. .
NATURE, 2007, 447 (7145) :661-678
[7]   A single-nucleotide polymorphism in the gene encoding lymphoid protein tyrosine phosphatase (PTPN22) confers susceptibility to generalised vitiligo [J].
Cantón, I ;
Akhtar, S ;
Gavalas, NG ;
Gawkrodger, DJ ;
Blomhoff, A ;
Watson, PF ;
Weetman, AP ;
Kemp, EH .
GENES AND IMMUNITY, 2005, 6 (07) :584-587
[8]   PTPN22 genetic variation:: Evidence for multiple variants associated with rheumatoid arthritis [J].
Carlton, VEH ;
Hu, XL ;
Chokkalingam, AP ;
Schrodi, SJ ;
Brandon, R ;
Alexander, HC ;
Chang, M ;
Catanese, JJ ;
Leong, DU ;
Ardlie, KG ;
Kastner, DL ;
Seldin, MF ;
Criswell, LA ;
Gregersen, PK ;
Beasley, E ;
Thomson, G ;
Amos, CI ;
Begovich, AB .
AMERICAN JOURNAL OF HUMAN GENETICS, 2005, 77 (04) :567-581
[9]   Cooperative inhibition of T-cell antigen receptor signaling by a complex between a kinase and a phosphatase [J].
Cloutier, JF ;
Veillette, A .
JOURNAL OF EXPERIMENTAL MEDICINE, 1999, 189 (01) :111-121
[10]   Evolving concepts of rheumatoid arthritis [J].
Firestein, GS .
NATURE, 2003, 423 (6937) :356-361