Methylotrophy in a Lake: from Metagenomics to Single-Organism Physiology

被引：44

作者：

Chistoserdova, Ludmila ^{[1
]}

机构：

[1] Univ Washington, Dept Chem Engn, Seattle, WA 98195 USA

来源：

APPLIED AND ENVIRONMENTAL MICROBIOLOGY | 2011年 / 77卷 / 14期

基金：

美国国家科学基金会;

关键词：

SP-NOV; METHYLOTENERA-MOBILIS; WASHINGTON; METHANE; METHANOTROPH; GENOME; METABOLISM; BACTERIUM; EMISSIONS; OXIDATION;

D O I：

10.1128/AEM.00314-11

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 [微生物学]; 090105 [作物生产系统与生态工程];

摘要：

This review provides a brief summary of ongoing studies in Lake Washington (Seattle, WA) directed at an understanding of the content and activities of microbial communities involved in methylotrophy. One of the findings from culture-independent approaches, including functional metagenomics, is the prominent presence of Methylotenera species in the site and their inferred activity in C-1 metabolism, highlighting the local environmental importance of this group. Comparative analyses of individual genomes of Methylophilaceae from Lake Washington provide insights into their genomic divergence and suggest significant metabolic flexibility.

引用

收藏

页码：4705 / 4711

页数：7

相关论文

共 49 条

[1]

Anthony C., 1982, BIOCH METHYLOTROPHS

[2]

Analysis of sMMO-containing Type I methanotrophs in Lake Washington sediment [J].

Auman, AJ ;

Lidstrom, ME .

ENVIRONMENTAL MICROBIOLOGY, 2002, 4 (09) :517-524

[3]

Molecular characterization of methanotrophic isolates from freshwater lake sediment [J].

Auman, AJ ;

Stolyar, S ;

Costello, AM ;

Lidstrom, ME .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2000, 66 (12) :5259-5266

[4]

Purification and Characterization of Dimethylsulfide Monooxygenase from Hyphomicrobium sulfonivorans [J].

Boden, Rich ;

Borodina, Elena ;

Wood, Ann P. ;

Kelly, Donovan P. ;

Murrell, J. Colin ;

Schaefer, Hendrik .

JOURNAL OF BACTERIOLOGY, 2011, 193 (05) :1250-1258

[5]

Insights into the physiology of Methylotenera mobilis as revealed by metagenome-based shotgun proteomic analysis [J].

Bosch, Gundula ;

Wang, Tiansong ;

Latypova, Ekaterina ;

Kalyuzhnaya, Marina G. ;

Hackett, Murray ;

Chistoserdova, Ludmila .

MICROBIOLOGY-SGM, 2009, 155 :1103-1110

[6]

When metagenomics meets stable-isotope probing: progress and perspectives [J].

Chen, Yin ;

Murrell, J. Colin .

TRENDS IN MICROBIOLOGY, 2010, 18 (04) :157-163

[7]

The enigmatic Planctomycetes may hold a key to the origins of methanogenesis and methylotrophy [J].

Chistoserdova, L ;

Jenkins, C ;

Kalyuzhnaya, MG ;

Marx, CJ ;

Lapidus, A ;

Vorholt, JA ;

Staley, JT ;

Lidstrom, ME .

MOLECULAR BIOLOGY AND EVOLUTION, 2004, 21 (07) :1234-1241

[8]

Genome of Methylobacillus flagellatus, molecular basis for obligate methylotrophy, and polyphyletic origin of methylotrophy [J].

Chistoserdova, Ludmila ;

Lapidus, Alla ;

Han, Cliff ;

Goodwin, Lynne ;

Saunders, Liz ;

Brettin, Tom ;

Tapia, Roxanne ;

Gilna, Paul ;

Lucas, Susan ;

Richardson, Paul M. ;

Lidstrom, Mary E. .

JOURNAL OF BACTERIOLOGY, 2007, 189 (11) :4020-4027

[9]

Modularity of methylotrophy, revisited [J].

Chistoserdova, Ludmila .

ENVIRONMENTAL MICROBIOLOGY, 2011, 13 (10) :2603-2622

[10]

Estimation of methanotroph abundance in a freshwater lake sediment [J].

Costello, AM ;

Auman, AJ ;

Macalady, JL ;

Scow, KM ;

Lidstrom, ME .

ENVIRONMENTAL MICROBIOLOGY, 2002, 4 (08) :443-450

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