Complete genome sequence of Methanocorpusculum labreanum type strain Z

被引：29

作者：

Anderson, Iain J. ^{[1
]}

Sieprawska-Lupa, Magdalena ^{[2
]}

Goltsman, Eugene ^{[1
]}

Lapidus, Alla ^{[1
]}

Copeland, Alex ^{[1
]}

Del Rio, Tijana Glavina ^{[1
]}

Tice, Hope ^{[1
]}

Dalin, Eileen ^{[1
]}

Barry, Kerrie ^{[1
]}

Pitluck, Sam ^{[1
]}

Hauser, Loren ^{[1
,3
]}

Land, Miriam ^{[1
,3
]}

Lucas, Susan ^{[1
]}

Richardson, Paul ^{[1
]}

Whitman, William B. ^{[2
]}

Kyrpides, Nikos C. ^{[1
]}

机构：

[1] Joint Genome Inst, Walnut Creek, CA 94598 USA

[2] Univ Georgia, Dept Microbiol, Athens, GA 30602 USA

[3] Oak Ridge Natl Lab, Oak Ridge, TN USA

来源：

STANDARDS IN GENOMIC SCIENCES | 2009年 / 1卷 / 02期

关键词：

archaea; methanogen; Methanomicrobiales; IDENTIFICATION; METHANOGENS; DIVERSITY; ARCHAEA; SYSTEM; GENES; TOOL; NOV;

D O I：

10.4056/sigs.35575

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Methanocorpusculum labreanum is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain Z was isolated from surface sediments of Tar Pit Lake in the La Brea Tar Pits in Los Angeles, California. M. labreanum is of phylogenetic interest because at the time the sequencing project began only one genome had previously been sequenced from the order Methanomicrobiales. We report here the complete genome sequence of M. labreanum type strain Z and its annotation. This is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.

引用

收藏

页码：197 / 203

页数：7

相关论文

共 29 条

[1] Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens [J].

Anderson, Iain ;

Ulrich, Luke E. ;

Lupa, Boguslaw ;

Susanti, Dwi ;

Porat, Iris ;

Hooper, Sean D. ;

Lykidis, Athanasios ;

Sieprawska-Lupa, Magdalena ;

Dharmarajan, Lakshmi ;

Goltsman, Eugene ;

Lapidus, Alla ;

Saunders, Elizabeth ;

Han, Cliff ;

Land, Miriam ;

Lucas, Susan ;

Mukhopadhyay, Biswarup ;

Whitman, William B. ;

Woese, Carl ;

Bristow, James ;

Kyrpides, Nikos .

PLOS ONE, 2009, 4 (06)

[2]

[Anonymous], INT J SYST BACTERIOL

[3] CRITICA: Coding region identification tool invoking comparative analysis [J].

Badger, JH ;

Olsen, GJ .

MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (04) :512-524

[4] METHANOGENS - RE-EVALUATION OF A UNIQUE BIOLOGICAL GROUP [J].

BALCH, WE ;

FOX, GE ;

MAGRUM, LJ ;

WOESE, CR ;

WOLFE, RS .

MICROBIOLOGICAL REVIEWS, 1979, 43 (02) :260-296

[5]

Bapteste Eric, 2005, Archaea, V1, P353, DOI 10.1155/2005/859728

[6] CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats [J].

Bland, Charles ;

Ramsey, Teresa L. ;

Sabree, Fareedah ;

Lowe, Micheal ;

Brown, Kyndall ;

Kyrpides, Nikos C. ;

Hugenholtz, Philip .

BMC BIOINFORMATICS, 2007, 8 (1)

[7] The Ribosomal Database Project: improved alignments and new tools for rRNA analysis [J].

Cole, J. R. ;

Wang, Q. ;

Cardenas, E. ;

Fish, J. ;

Chai, B. ;

Farris, R. J. ;

Kulam-Syed-Mohideen, A. S. ;

McGarrell, D. M. ;

Marsh, T. ;

Garrity, G. M. ;

Tiedje, J. M. .

NUCLEIC ACIDS RESEARCH, 2009, 37 :D141-D145

[8] Improved microbial gene identification with GLIMMER [J].

Delcher, AL ;

Harmon, D ;

Kasif, S ;

White, O ;

Salzberg, SL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (23) :4636-4641

[9] Methanogen diversity evidenced by molecular characterization of methyl coenzyme M reductase A (mcrA) genes in hydrothermal sediments of the Guaymas Basin [J].

Dhillon, A ;

Lever, M ;

Lloyd, KG ;

Albert, DB ;

Sogin, ML ;

Teske, A .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (08) :4592-4601

[10] Locating proteins in the cell using TargetP, SignalP and related tools [J].

Emanuelsson, Olof ;

Brunak, Soren ;

von Heijne, Gunnar ;

Nielsen, Henrik .

NATURE PROTOCOLS, 2007, 2 (04) :953-971