13C incorporation into DNA as a means of identifying the active components of ammonia-oxidizer populations

Aims: To identify active CO2-assimilating species of ammonia-oxidizing bacteria in fresh water sediment. Methods and Results: Enrichment cultures were incubated in the presence of C-13 labelled CO2, and C-13-DNA successfully resolved from C-12-DNA by caesium chloride density gradient ultracentrifugation of DNA extracts. Ammonia-oxidizer DNA recovered from these gradients was amplified and characterised by Temporal Temperature Gradient Gel Electrophoresis (TTGE), with confirmatory sequence analysis to identify. the metabolically active components of the population. Conclusions: The C-12-DNA fraction was dominated by nitrosospiras, in contrast to the C-13-DNA fraction which was largely nitrosomonad DNA, in support of the hypothesis that nitrosomonads out-compete nitrosospiras in laboratory culture. Significance and Impact of the Study: The use of stable isotype incorporation into ammonia-oxidizer DNA could therefore circumvent the problems associated with RNA detection to identify metabolically active species in situ.