Stable and unstable attractors in Boolean networks

被引:106
作者
Klemm, K
Bornholdt, S
机构
[1] Univ Leipzig, Dept Bioinformat, D-04107 Leipzig, Germany
[2] Univ Bremen, Inst Theoret Phys, D-04107 Bremen, Germany
来源
PHYSICAL REVIEW E | 2005年 / 72卷 / 05期
关键词
D O I
10.1103/PhysRevE.72.055101
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Boolean networks at the critical point have been a matter of debate for many years as, e.g., the scaling of numbers of attractors with system size. Recently it was found that this number scales superpolynomially with system size, contrary to a common earlier expectation of sublinear scaling. We point out here that these results are obtained using deterministic parallel update, where a large fraction of attractors are an artifact of the updating scheme. This limits the significance of these results for biological systems where noise is omnipresent. Here we take a fresh look at attractors in Boolean networks with the original motivation of simplified models for biological systems in mind. We test the stability of attractors with respect to infinitesimal deviations from synchronous update and find that most attractors are artifacts arising from synchronous clocking. The remaining fraction of attractors are stable against fluctuating delays. The average number of these stable attractors grows sublinearly with system size in the numerically tractable range.
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页数:4
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