Microarray-based genomic selection for high-throughput resequencing

被引:260
作者
Okou, David T.
Steinberg, Karyn Meltz
Middle, Christina
Cutler, David J.
Albert, Thomas J.
Zwick, Michael E.
机构
[1] Emory Univ, Sch Med, Dept Human Genet, Atlanta, GA 30322 USA
[2] Emory Univ, Program Populat Biol Ecol & Evolut, Atlanta, GA 30322 USA
[3] NimbleGen Syst Inc, Madison, WI 53711 USA
关键词
D O I
10.1038/NMETH1109
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We developed a general method, microarray-based genomic selection (MGS), capable of selecting and enriching targeted sequences from complex eukaryotic genomes without the repeat blocking steps necessary for bacterial artificial chromosome (BAC)-based genomic selection. We demonstrate that large human genomic regions, on the order of hundreds of kilobases, can be enriched and resequenced with resequencing arrays. MGS, when combined with a next-generation resequencing technology, can enable large-scale resequencing in singleinvestigator laboratories.
引用
收藏
页码:907 / 909
页数:3
相关论文
共 17 条
[1]  
ALBERT TJ, NAT METHODS
[2]   Direct genomic selection [J].
Bashiardes, S ;
Veile, R ;
Helms, C ;
Mardis, ER ;
Bowcock, AM ;
Lovett, M .
NATURE METHODS, 2005, 2 (01) :63-69
[3]   Whole-genome re-sequencing [J].
Bentley, David R. .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2006, 16 (06) :545-552
[4]   High-throughput variation detection and genotyping using microarrays [J].
Cutler, DJ ;
Zwick, ME ;
Carrasquillo, MM ;
Yohn, CT ;
Tobin, KP ;
Kashuk, C ;
Mathews, DJ ;
Shah, NA ;
Eichler, EE ;
Warrington, JA ;
Chakravarti, A .
GENOME RESEARCH, 2001, 11 (11) :1913-1925
[5]   Multigene amplification and massively parallel sequencing for cancer mutation discovery [J].
Dahl, Fredrik ;
Stenberg, Johan ;
Fredriksson, Simon ;
Welch, Katrina ;
Zhang, Michael ;
Nilsson, Mats ;
Bicknell, David ;
Bodmer, Walter F. ;
Davis, Ronald W. ;
Ji, Hanlee .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (22) :9387-9392
[6]   A POINT MUTATION IN THE FMR-1 GENE ASSOCIATED WITH FRAGILE-X MENTAL-RETARDATION [J].
DEBOULLE, K ;
VERKERK, AJMH ;
REYNIERS, E ;
VITS, L ;
HENDRICKX, J ;
VANROY, B ;
VANDENBOS, F ;
DEGRAAFF, E ;
OOSTRA, BA ;
WILLEMS, PJ .
NATURE GENETICS, 1993, 3 (01) :31-35
[7]   A DE-NOVO DELETION IN FMR1 IN A PATIENT WITH DEVELOPMENTAL DELAY [J].
GU, YH ;
LUGENBEEL, KA ;
VOCKLEY, JG ;
GRODY, WW ;
NELSON, DL .
HUMAN MOLECULAR GENETICS, 1994, 3 (09) :1705-1706
[8]   Whole-genome patterns of common DNA variation in three human populations [J].
Hinds, DA ;
Stuve, LL ;
Nilsen, GB ;
Halperin, E ;
Eskin, E ;
Ballinger, DG ;
Frazer, KA ;
Cox, DR .
SCIENCE, 2005, 307 (5712) :1072-1079
[9]  
Kouprina Natalay, 2006, V349, P85
[10]   Genome sequencing in microfabricated high-density picolitre reactors [J].
Margulies, M ;
Egholm, M ;
Altman, WE ;
Attiya, S ;
Bader, JS ;
Bemben, LA ;
Berka, J ;
Braverman, MS ;
Chen, YJ ;
Chen, ZT ;
Dewell, SB ;
Du, L ;
Fierro, JM ;
Gomes, XV ;
Godwin, BC ;
He, W ;
Helgesen, S ;
Ho, CH ;
Irzyk, GP ;
Jando, SC ;
Alenquer, MLI ;
Jarvie, TP ;
Jirage, KB ;
Kim, JB ;
Knight, JR ;
Lanza, JR ;
Leamon, JH ;
Lefkowitz, SM ;
Lei, M ;
Li, J ;
Lohman, KL ;
Lu, H ;
Makhijani, VB ;
McDade, KE ;
McKenna, MP ;
Myers, EW ;
Nickerson, E ;
Nobile, JR ;
Plant, R ;
Puc, BP ;
Ronan, MT ;
Roth, GT ;
Sarkis, GJ ;
Simons, JF ;
Simpson, JW ;
Srinivasan, M ;
Tartaro, KR ;
Tomasz, A ;
Vogt, KA ;
Volkmer, GA .
NATURE, 2005, 437 (7057) :376-380