METHODS FOR CELL AND PARTICLE TRACKING

被引:1081
作者
Meijering, Erik [1 ,2 ]
Dzyubachyk, Oleh [1 ,2 ]
Smal, Ihor [1 ,2 ]
机构
[1] Erasmus MC Univ Med Ctr Rotterdam, Biomed Imaging Grp Rotterdam, Dept Med Informat, Rotterdam, Netherlands
[2] Erasmus MC Univ Med Ctr Rotterdam, Biomed Imaging Grp Rotterdam, Dept Radiol, Rotterdam, Netherlands
来源
IMAGING AND SPECTROSCOPIC ANALYSIS OF LIVING CELLS: OPTICAL AND SPECTROSCOPIC TECHNIQUES | 2012年 / 504卷
关键词
BIOIMAGE INFORMATICS; AUTOMATIC TRACKING; MICROSCOPY; QUANTIFICATION; MOTILITY; IMAGES;
D O I
10.1016/B978-0-12-391857-4.00009-4
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Achieving complete understanding of any living thing inevitably requires thorough analysis of both its anatomic and dynamic properties. Live-cell imaging experiments carried out to this end often produce massive amounts of timelapse image data containing far more information than can be digested by a human observer. Computerized image analysis offers the potential to take full advantage of available data in an efficient and reproducible manner. A recurring task in many experiments is the tracking of large numbers of cells or particles and the analysis of their (morpho)dynamic behavior. In the past decade, many methods have been developed for this purpose, and software tools based on these are increasingly becoming available. Here, we survey the latest developments in this area and discuss the various computational approaches, software tools, and quantitative measures for tracking and motion analysis of cells and particles in time-lapse microscopy images.
引用
收藏
页码:183 / 200
页数:18
相关论文
共 45 条
[1]   4-D single particle tracking of synthetic and proteinaceous microspheres reveals preferential movement of nuclear particles along chromatin-poor tracks [J].
Bacher, CP ;
Reichenzeller, M ;
Athale, C ;
Herrmann, H ;
Eils, R .
BMC CELL BIOLOGY, 2004, 5 (1)
[2]   Automated measurement of cell motility and proliferation [J].
Bahnson, A ;
Athanassiou, C ;
Koebler, D ;
Qian, L ;
Shun, T ;
Shields, D ;
Yu, H ;
Wang, H ;
Goff, J ;
Cheng, T ;
Houck, R ;
Cowsert, L .
BMC CELL BIOLOGY, 2005, 6 (1)
[3]   Quantitative morphological signatures define local signaling networks regulating cell morphology [J].
Bakal, Chris ;
Aach, John ;
Church, George ;
Perrimon, Norbert .
SCIENCE, 2007, 316 (5832) :1753-1756
[4]   Analysing immune cell migration [J].
Beltman, Joost B. ;
Maree, Athanasius F. M. ;
de Boer, Rob J. .
NATURE REVIEWS IMMUNOLOGY, 2009, 9 (11) :789-798
[5]   Associative image analysis: A method for automated quantification of 3D multi-parameter images of brain tissue [J].
Bjornsson, Christopher S. ;
Lin, Gang ;
Al-Kofahi, Yousef ;
Narayanaswamy, Arunachalam ;
Smith, Karen L. ;
Shain, William ;
Roysam, Badrinath .
JOURNAL OF NEUROSCIENCE METHODS, 2008, 170 (01) :165-178
[6]   Single quantum dot tracking based on perceptual grouping using minimal paths in a spatiotemporal volume [J].
Bonneau, S ;
Dahan, M ;
Cohen, LD .
IEEE TRANSACTIONS ON IMAGE PROCESSING, 2005, 14 (09) :1384-1395
[7]   Analysis of Cell Movement by Simultaneous Quantification of Local Membrane Displacement and Fluorescent Intensities Using Quimp2 [J].
Bosgraaf, Leonard ;
van Haastert, Peter J. M. ;
Bretschneider, Till .
CELL MOTILITY AND THE CYTOSKELETON, 2009, 66 (03) :156-165
[8]   AceTree:: a tool for visual analysis of Caenorhabditis elegans embryogenesis [J].
Boyle, Thomas J. ;
Bao, Zhirong ;
Murray, John I. ;
Araya, Carlos L. ;
Waterston, Robert H. .
BMC BIOINFORMATICS, 2006, 7 (1)
[9]   ALES: cell lineage analysis and mapping of developmental events [J].
Braun, V ;
Azevedo, RBR ;
Gumbel, M ;
Agapow, PM ;
Leroi, AM ;
Meinzer, HP .
BIOINFORMATICS, 2003, 19 (07) :851-858
[10]   CellProfiler: image analysis software for identifying and quantifying cell phenotypes [J].
Carpenter, Anne E. ;
Jones, Thouis Ray ;
Lamprecht, Michael R. ;
Clarke, Colin ;
Kang, In Han ;
Friman, Ola ;
Guertin, David A. ;
Chang, Joo Han ;
Lindquist, Robert A. ;
Moffat, Jason ;
Golland, Polina ;
Sabatini, David M. .
GENOME BIOLOGY, 2006, 7 (10)