PRIDEViewer: A novel user-friendly interface to visualize PRIDE XML files

被引：4

作者：

Alberto Medina-Aunon, J. ^{[1
]}

Carazo, Jose M. ^{[2
]}

Pablo Albar, Juan ^{[1
]}

机构：

[1] CSIC, CNB, Prote Facil, Madrid 28049, Spain

[2] CSIC, CNB, Biocomp Unit, Madrid 28049, Spain

来源：

PROTEOMICS | 2011年 / 11卷 / 02期

关键词：

PROTEOMICS; IDENTIFICATIONS; PROTEIN;

D O I：

10.1002/pmic.201000448

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Current standardization initiatives have greatly contributed to share the information derived by proteomics experiments. One of these initiatives is the XML-based repository PRIDE (PRoteomics IDEntification database), although an XML-based document does not appear to present a user-friendly view at the first glance. PRIDEViewer is a novel Java-based application that presents the information available in a PRIDE XML file in a user-friendly manner, facilitating the interaction among end users as well as the understanding and evaluation of the compiled information. PRIDEViewer is freely available at: http://proteo.cnb.csic.es/prideviewer/.

引用

页码：334 / 337

页数：4

共 10 条

[1] PRIDE Converter: making proteomics data-sharing easy [J].

Barsnes, Harald ;

Vizcaino, Juan Antonio ;

Eidhammer, Ingvar ;

Martens, Lennart .

NATURE BIOTECHNOLOGY, 2009, 27 (07) :598-599

[2]

Deutsch EW, 2010, METHODS MOL BIOL, V604, P319, DOI 10.1007/978-1-60761-444-9_22

[3] PRIDE:: a public repository of protein and peptide identifications for the proteomics community [J].

Jones, Philip ;

Cote, Richard G. ;

Martens, Lennart ;

Quinn, Antony F. ;

Taylor, Chris F. ;

Derache, William ;

Hermjakob, Henning ;

Apweiler, Rolf .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D659-D663

[4]

Martens L., 2005, Proteomics, V5, P3537

[5] The proteomics standards initiative [J].

Orchard, S ;

Hermjakob, H ;

Apweiler, R .

PROTEOMICS, 2003, 3 (07) :1374-1376

[6]

Orchard Sandra, 2007, Methods Mol Biol, V367, P261

[7]

Perkins DN, 1999, ELECTROPHORESIS, V20, P3551, DOI 10.1002/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO

[8]

2-2

[9]

Roepstorff P., 1985, J BIOMED SPECTROM, V11, P601

[10] The Proteomics Identifications database: 2010 update [J].

Vizcaino, Juan Antonio ;

Cote, Richard ;

Reisinger, Florian ;

Barsnes, Harald ;

Foster, Joseph M. ;

Rameseder, Jonathan ;

Hermjakob, Henning ;

Martens, Lennart .

NUCLEIC ACIDS RESEARCH, 2010, 38 :D736-D742

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