Tabix: fast retrieval of sequence features from generic TAB-delimited files

被引：357

作者：

Li, Heng ^{[1
]}

机构：

[1] Broad Inst Harvard & MIT, Program Med Populat Genet, Cambridge, MA 02142 USA

来源：

BIOINFORMATICS | 2011年 / 27卷 / 05期

关键词：

GENOME BROWSER; DATABASE; UCSC;

D O I：

10.1093/bioinformatics/btq671

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Tabix is the first generic tool that indexes position sorted files in TAB-delimited formats such as GFF, BED, PSL, SAM and SQL export, and quickly retrieves features overlapping specified regions. Tabix features include few seek function calls per query, data compression with gzip compatibility and direct FTP/HTTP access. Tabix is implemented as a free command-line tool as well as a library in C, Java, Perl and Python. It is particularly useful for manually examining local genomic features on the command line and enables genome viewers to support huge data files and remote custom tracks over networks.

引用

页码：718 / 719

页数：2

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