TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data

被引：51

作者：

Asmann, Yan W. ^{[1
]}

Middha, Sumit ^{[1
]}

Hossain, Asif ^{[1
]}

Baheti, Saurabh ^{[1
]}

Li, Ying ^{[1
]}

Chai, High-Seng ^{[1
]}

Sun, Zhifu ^{[1
]}

Duffy, Patrick H. ^{[1
]}

Hadad, Ahmed A. ^{[1
]}

Nair, Asha ^{[1
]}

Liu, Xiaoyu ^{[1
]}

Zhang, Yuji ^{[1
]}

Klee, Eric W. ^{[1
]}

Kalari, Krishna R. ^{[1
]}

Kocher, Jean-Pierre A. ^{[1
]}

机构：

[1] Mayo Coll Med, Div Biomed Stat & Informat, Dept Hlth Sci Res, Rochester, MN USA

来源：

BIOINFORMATICS | 2012年 / 28卷 / 02期

关键词：

GENERATION; ALIGNMENT;

D O I：

10.1093/bioinformatics/btr612

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

TREAT ( Targeted RE- sequencing Annotation Tool) is a tool for facile navigation and mining of the variants from both targeted resequencing and whole exome sequencing. It provides a rich integration of publicly available as well as in- house developed annotations and visualizations for variants, variant- hosting genes and host- gene pathways.

引用

页码：277 / 278

页数：2

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