Conversion of monomeric protein L to an obligate dimer by computational protein design

被引:68
作者
Kuhlman, B
O'Neill, JW
Kim, DE
Zhang, KYJ
Baker, D [1 ]
机构
[1] Univ Washington, Dept Biochem, Seattle, WA 98195 USA
[2] Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA
[3] Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA
关键词
D O I
10.1073/pnas.181354398
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Protein L consists of a single a-helix packed on a four-stranded beta -sheet formed by two symmetrically opposed beta -hairpins. We use a computer-based protein design procedure to stabilize a domain-swapped dimer of protein L in which the second beta -turn straightens and the C-terminal strand inserts into the beta -sheet of the partner. The designed obligate dimer contains three mutations (A52V, N53P, and G55A) and has a dissociation constant of approximate to 700 pM, which is comparable to the dissociation constant of many naturally occurring protein dimers. The structure of the dimer has been determined by x-ray crystallography and is close to the in silico model.
引用
收藏
页码:10687 / 10691
页数:5
相关论文
共 27 条
[1]   High-resolution structure of an engineered cro monomer shows changes in conformation relative to the native dimer [J].
Albright, RA ;
Mossing, MC ;
Matthews, BW .
BIOCHEMISTRY, 1996, 35 (03) :735-742
[2]   DOMAIN SWAPPING - ENTANGLING ALLIANCES BETWEEN PROTEINS [J].
BENNETT, MJ ;
CHOE, S ;
EISENBERG, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (08) :3127-3131
[3]   Entropy in protein folding and in protein-protein interactions [J].
Brady, GP ;
Sharp, KA .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1997, 7 (02) :215-221
[4]   FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES [J].
BRUNGER, AT .
NATURE, 1992, 355 (6359) :472-475
[5]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[6]   VERIFICATION OF PROTEIN STRUCTURES - PATTERNS OF NONBONDED ATOMIC INTERACTIONS [J].
COLOVOS, C ;
YEATES, TO .
PROTEIN SCIENCE, 1993, 2 (09) :1511-1519
[7]   DE-NOVO DESIGN OF THE HYDROPHOBIC CORES OF PROTEINS [J].
DESJARLAIS, JR ;
HANDEL, TM .
PROTEIN SCIENCE, 1995, 4 (10) :2006-2018
[8]   Creation of a biologically active interleukin-5 monomer [J].
Dickason, RR ;
Huston, DP .
NATURE, 1996, 379 (6566) :652-655
[9]   ONE-STEP EVOLUTION OF A DIMER FROM A MONOMERIC PROTEIN [J].
GREEN, SM ;
GITTIS, AG ;
MEEKER, AK ;
LATTMAN, EE .
NATURE STRUCTURAL BIOLOGY, 1995, 2 (09) :746-751
[10]   High-resolution protein design with backbone freedom [J].
Harbury, PB ;
Plecs, JJ ;
Tidor, B ;
Alber, T ;
Kim, PS .
SCIENCE, 1998, 282 (5393) :1462-1467