Development of epitope-based peptide vaccine against novel coronavirus 2019 (SARS-COV-2): Immunoinformatics approach

被引:283
作者
Bhattacharya, Manojit [1 ,2 ]
Sharma, Ashish R. [1 ]
Patra, Prasanta [2 ]
Ghosh, Pratik [2 ]
Sharma, Garima [3 ]
Patra, Bidhan C. [2 ]
Lee, Sang-Soo [1 ]
Chakraborty, Chiranjib [1 ,4 ]
机构
[1] Hallym Univ, Chuncheon Sacred Heart Hosp, Inst Skeletal Aging & Orthoped Surg, Chuncheon Si 24252, Gangwon Do, South Korea
[2] Vidyasagar Univ, Dept Zool, Midnapore, W Bengal, India
[3] Kangwon Natl Univ, Coll Pharm, Neuropsychopharmacol & Toxicol Program, Chunchon, South Korea
[4] Adamas Univ, Sch Life Sci & Biotechnol, Dept Biotechnol, Barasat Barrackpore Rd, Kolkata 700126, W Bengal, India
基金
新加坡国家研究基金会;
关键词
epitopes; immunoinformatics; SARS-COV-2; vaccine; GLOBAL HEALTH; PROTEIN; PREDICTION; RECOGNITION; OUTBREAK;
D O I
10.1002/jmv.25736
中图分类号
Q93 [微生物学];
学科分类号
071005 [微生物学];
摘要
Recently, a novel coronavirus (SARS-COV-2) emerged which is responsible for the recent outbreak in Wuhan, China. Genetically, it is closely related to SARS-CoV and MERS-CoV. The situation is getting worse and worse, therefore, there is an urgent need for designing a suitable peptide vaccine component against the SARS-COV-2. Here, we characterized spike glycoprotein to obtain immunogenic epitopes. Next, we chose 13 Major Histocompatibility Complex-(MHC) I and 3 MHC-II epitopes, having antigenic properties. These epitopes are usually linked to specific linkers to build vaccine components and molecularly dock on toll-like receptor-5 to get binding affinity. Therefore, to provide a fast immunogenic profile of these epitopes, we performed immunoinformatics analysis so that the rapid development of the vaccine might bring this disastrous situation to the end earlier.
引用
收藏
页码:618 / 631
页数:14
相关论文
共 26 条
[1]
Acland A, 2013, NUCLEIC ACIDS RES, V41, pD8, DOI [10.1093/nar/gkx1095, 10.1093/nar/gks1189, 10.1093/nar/gkq1172]
[2]
A homology model for Clostridium difficile methionyl tRNA synthetase: active site analysis and docking interactions [J].
Al-Moubarak, Ehab ;
Simons, Claire .
JOURNAL OF MOLECULAR MODELING, 2011, 17 (07) :1679-1693
[3]
[Anonymous], 2019, INT J PEP RES THER
[4]
Carlos WG, 2020, AM J RESP CRIT CARE, V201, pP7, DOI 10.1164/rccm.2014P7
[5]
A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster [J].
Chan, Jasper Fuk-Woo ;
Yuan, Shuofeng ;
Kok, Kin-Hang ;
To, Kelvin Kai-Wang ;
Chu, Hin ;
Yang, Jin ;
Xing, Fanfan ;
Liu, Jieling ;
Yip, Cyril Chik-Yan ;
Poon, Rosana Wing-Shan ;
Tsoi, Hoi-Wah ;
Lo, Simon Kam-Fai ;
Chan, Kwok-Hung ;
Poon, Vincent Kwok-Man ;
Chan, Wan-Mui ;
Ip, Jonathan Daniel ;
Cai, Jian-Piao ;
Cheng, Vincent Chi-Chung ;
Chen, Honglin ;
Hui, Christopher Kim-Ming ;
Yuen, Kwok-Yung .
LANCET, 2020, 395 (10223) :514-523
[6]
Fusion protein linkers: Property, design and functionality [J].
Chen, Xiaoying ;
Zaro, Jennica L. ;
Shen, Wei-Chiang .
ADVANCED DRUG DELIVERY REVIEWS, 2013, 65 (10) :1357-1369
[7]
Chung MS, 2020, EUR RADIOL, V30, P2182, DOI [10.1007/s00330-019-06574-1, 10.1148/radiol.2020200230]
[8]
DeLano WL., 2002, The PyMOL Molecular Graphics System
[9]
VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines [J].
Doytchinova, Irini A. ;
Flower, Darren R. .
BMC BIOINFORMATICS, 2007, 8 (1)
[10]
The continuing 2019-nCoV epidemic threat of novel coronaviruses to global health - The latest 2019 novel coronavirus outbreak in Wuhan, China [J].
Hui, David S. ;
Azhar, Esam I. ;
Madani, Tariq A. ;
Ntoumi, Francine ;
Kock, Richard ;
Dar, Osman ;
Ippolito, Giuseppe ;
Mchugh, Timothy D. ;
Memish, Ziad A. ;
Drosten, Christian ;
Zumla, Alimuddin ;
Petersen, Eskild .
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 2020, 91 :264-266