Multiscale Modeling of Four-Component Lipid Mixtures: Domain Composition, Size, Alignment, and Properties of the Phase Interface

被引:75
作者
Ackerman, David G. [1 ]
Feigenson, Gerald W. [1 ]
机构
[1] Cornell Univ, Dept Mol Biol & Genet, Ithaca, NY 14853 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; COARSE-GRAINED MODEL; PARTICLE MESH EWALD; TRANSMEMBRANE HELICES; COMPUTER-SIMULATIONS; MODULATED PHASES; BILAYER MIXTURES; MEMBRANE RAFTS; LINE TENSION; FORCE-FIELD;
D O I
10.1021/jp511083z
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Simplified lipid mixtures are often used to model the complex behavior of the cell plasma membrane. Indeed, as few as four components-a high-melting lipid, a nandomain-inducing low-melting lipid, a macrodomain-inducing low-melting lipid, and cholesterol (chol)-can give rise to a wide range of domain sizes and patterns that are highly sensitive to lipid compositions. Although these systems are studied extensively with experiments, the molecular-level details governing their phase behavior are not yet known. We address this issue by using molecular dynamics simulations to analyze how phase separation evolves in a four-component system as it transitions from small domains to large domains. To do so, we fix concentrations of the high-melting lipid 16:0,16:0-phosphatidylcholine (DPPC) and chol, and incrementally replace the nanodomain-inducing low-melting lipid 16:0,18:2-PC (PUPC) by the macrodomain-inducing low-melting lipid 18:2,18:2-PC (DUPC). Coarse-grained simulations of this four-component system reveal that lipid demixing increases as the amount of DUPC increases. Additionally, we find that domain size and interleaflet alignment change sharply over a narrow range of replacement of PUPC by DUPC, indicating that intraleaflet and interleaflet behaviors are coupled. Corresponding united atom simulations show that only lipids within similar to 2 nm of the phase interface are significantly perturbed regardless of domain composition or size. Thus, whereas the fraction of interface-perturbed lipids is negligible for large domains, it is significant for smaller ones. Together, these results reveal characteristic traits of bilayer thermodynamic behavior in four-component mixtures, and provide a baseline for investigation of the effects of proteins and other lipids on membrane phase properties.
引用
收藏
页码:4240 / 4250
页数:11
相关论文
共 74 条
[1]   Lattice simulations of phase morphology on lipid bilayers: Renormalization, membrane shape, and electrostatic dipole interactions [J].
Amazon, Jonathan J. ;
Feigenson, Gerald W. .
PHYSICAL REVIEW E, 2014, 89 (02)
[2]   Competition between line tension and curvature stabilizes modulated phase patterns on the surface of giant unilamellar vesicles: A simulation study [J].
Amazon, Jonathan J. ;
Goh, Shih Lin ;
Feigenson, Gerald W. .
PHYSICAL REVIEW E, 2013, 87 (02)
[3]  
[Anonymous], 1987, Groningen molecular simulation (gromos) library manual
[4]   Computer simulations of the phase separation in model membranes [J].
Baoukina, Svetlana ;
Mendez-Villuendas, Eduardo ;
Bennett, W. F. Drew ;
Tieleman, D. Peter .
FARADAY DISCUSSIONS, 2013, 161 :63-75
[5]   Molecular View of Phase Coexistence in Lipid Monolayers [J].
Baoukina, Svetlana ;
Mendez-Villuendas, Eduardo ;
Tieleman, D. Peter .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (42) :17543-17553
[6]   Computer simulations of lipid membrane domains [J].
Bennett, W. F. Drew ;
Tieleman, D. Peter .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2013, 1828 (08) :1765-1776
[7]  
Berendsen H. J. C., 1981, JER S QUANT CHEM BIO, P331, DOI DOI 10.1007/978-94-015-7658-121
[8]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[9]   Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature [J].
Berger, O ;
Edholm, O ;
Jahnig, F .
BIOPHYSICAL JOURNAL, 1997, 72 (05) :2002-2013
[10]   Canonical sampling through velocity rescaling [J].
Bussi, Giovanni ;
Donadio, Davide ;
Parrinello, Michele .
JOURNAL OF CHEMICAL PHYSICS, 2007, 126 (01)