Homology Modeling and Docking Studies of Human Bcl-2L10 Protein

被引:35
作者
Bhargavi, K. [2 ]
Chaitanya, P. Kalyan [1 ]
Ramasree, D. [1 ]
Vasavi, M. [1 ]
Murthy, D. K. [2 ]
Uma, V. [1 ]
机构
[1] Osmania Univ, Nizam Coll Autonomous, Dept Chem, Hyderabad 500001, Andhra Pradesh, India
[2] Osmania Univ, Univ Coll Sci, Dept Genet, Hyderabad 500007, Andhra Pradesh, India
关键词
Apoptosis; Bcl-2; Bcl-2L10; BH3; domain; Cancer therapy; Comparative Modeling; Molecular Docking; HYDROGEN-BONDS; MOLECULAR-DYNAMICS; BCL2; FAMILY; CLUSTAL-W; APOPTOSIS; DESIGN; DOMAIN; PROGRAM; CLASSIFICATION; ENVIRONMENT;
D O I
10.1080/07391102.2010.10507367
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
Cancer, an unrestrained proliferation of cells, is one of the lead cause of death. Nearly 12.5 million people are diagnosed with cancer worldwide, 7.5 million people die of which 2.5 million cases are from India. Major cause for cancer is restriction of programmed cell death (apoptosis). Multiple signaling pathways regulate apoptosis. Bcl-2 (B - Cell Lymphomas-2) family proteins play a vital role as central regulators of apoptosis. Bcl-2L10, a novel antiapoptotic protein, blocks apoptosis by mitochondrial dependent mechanism. The present study evaluates the 3D structure of Bcl-2L10 protein using homology modeling and aims to understand plausible functional and binding interactions between Bcl-2L10 with BH3 domain of BAX using protein protein docking. The docking studies show binding of BH3 domain at Lys 110, Trp-111, Pro-115, Glu-119 and Asp-127 in the groove of BH 1, 2 and 3 domains of Bcl-2L10. Heterodimerization of anti-apoptotic Bcl-2 and BH3 domain of proapoptotic Bcl-2 proteins instigates apoptosis. Profound understanding of Bcl-2 pathway may prove useful in identification of future therapeutic targets for cancer.
引用
收藏
页码:379 / 391
页数:13
相关论文
共 84 条
[1]
*ACC SOFTW INC, 1967, ACC DISC STUD VIS V
[2]
A Docking Study Using Atomistic Conformers Generated via Elastic Network Model for Cyclosporin A/Cyclophilin A Complex [J].
Akten, E. Demet ;
Cansu, Sertan ;
Doruker, Pemra .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2009, 27 (01) :13-25
[3]
BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[4]
[Anonymous], 2009, WORLD HLTH STAT
[5]
Intercalation of daunomycin into stacked DNA base pairs. DFT study of an anticancer drug [J].
Barone, Giampaolo ;
Guerra, Celia Fonseca ;
Gambino, Noemi ;
Silvestri, Arturo ;
Lauria, Antonino ;
Almerico, Anna Maria ;
Bickelhaupt, F. Matthias .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2008, 26 (01) :115-129
[6]
Cα-H•••O=C hydrogen bonds contribute to the specificity of RGD cell-adhesion interactions -: art. no. 4 [J].
Bella, J ;
Humphries, MJ .
BMC STRUCTURAL BIOLOGY, 2005, 5
[7]
PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[8]
A METHOD TO IDENTIFY PROTEIN SEQUENCES THAT FOLD INTO A KNOWN 3-DIMENSIONAL STRUCTURE [J].
BOWIE, JU ;
LUTHY, R ;
EISENBERG, D .
SCIENCE, 1991, 253 (5016) :164-170
[9]
Improved prediction of protein-protein binding sites using a support vector machines approach [J].
Bradford, JR ;
Westhead, DR .
BIOINFORMATICS, 2005, 21 (08) :1487-1494
[10]
Molecular dynamics, flexible docking, virtual screening, ADMET predictions, and molecular interaction field studies to design novel potential MAO-B inhibitors [J].
Braun, Glaucia H. ;
Jorge, Daniel M. M. ;
Ramos, Henrique P. ;
Alves, Raquel M. ;
da Silva, Vinicius B. ;
Giuliatti, Silvana ;
Sampaio, Suley Vilela ;
Taft, Carlton A. ;
Silva, Carlos H. T. P. .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2008, 25 (04) :347-355