Bio-jETI: a service integration, design, and provisioning platform for orchestrated bioinformatics processes

被引：16

作者：

Margaria, Tiziana ^{[1
]}

Kubczak, Christian ^{[2
]}

Steffen, Bernhard ^{[3
]}

机构：

[1] Univ Potsdam, Chair Serv & Software Engn, D-14482 Potsdam, Germany

[2] Dortmund Tech Univ, Chair Software Engn, D-44227 Dortmund, Germany

[3] Dortmund Tech Univ, Chair Programming Syst, D-44227 Dortmund, Germany

来源：

BMC BIOINFORMATICS | 2008年 / 9卷 / Suppl 4期

关键词：

Fatty Acid Amide Hydrolase; Composite Service; Service Orchestration; Rest Service; Electronic Tool Integration;

D O I：

10.1186/1471-2105-9-S4-S12

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Background: With Bio-jETI, we introduce a service platform for interdisciplinary work on biological application domains and illustrate its use in a concrete application concerning statistical data processing in R and xcms for an LC/MS analysis of FAAH gene knockout. Methods: Bio-jETI uses the jABC environment for service-oriented modeling and design as a graphical process modeling tool and the jETI service integration technology for remote tool execution. Conclusions: As a service definition and provisioning platform, Bio-jETI has the potential to become a core technology in interdisciplinary service orchestration and technology transfer. Domain experts, like biologists not trained in computer science, directly define complex service orchestrations as process models and use efficient and complex bioinformatics tools in a simple and intuitive way.

引用

页数：17

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