Assignment of terahertz vibrational modes of L-glutamine using density functional theory within generalized-gradient approximation

被引:24
作者
Zhang Han [1 ]
Zhang Zhao-Hui [1 ]
Zhao Xiao-Yan [1 ]
Zhang Tian-Yao [1 ]
Yan Fang [1 ]
Shen Jiang [2 ]
机构
[1] Univ Sci & Technol Beijing, Sch Automat & Elect Engn, Dept Instrumentat Sci, Beijing 100083, Peoples R China
[2] Univ Sci & Technol Beijing, Inst Appl Phys, Beijing 100083, Peoples R China
基金
中国国家自然科学基金;
关键词
terahertz vibrational modes; amino acid; plane-wave density functional theory; generalized-gradient approximation; TIME-DOMAIN SPECTROSCOPY; ABSORPTION-SPECTRA; DL-ALANINE; PRINCIPLES;
D O I
10.1088/1674-1056/24/7/073301
中图分类号
O4 [物理学];
学科分类号
070305 [高分子化学与物理];
摘要
The crystal structure of L-glutamine is stabilized by a three-dimensional network of intermolecular hydrogen bonds. We utilize plane-wave density functional theory lattice-dynamics calculations within the generalized-gradient approximation (GGA), Perdew-Burke-Ernzerhof (PBE), PBE for solids (PBEsol), PBE with Wu-Cohen exchange (WC), and dispersion-corrected PBE, to investigate the effect of these intermolecular contacts on the absorption spectra of glutamine in the terahertz frequency range. Among these calculations, the solid-state simulated results obtained using the WC method exhibit a good agreement with the measured absorption spectra, and the absorption features are assigned with the help of WC. This indicates that the vibrational modes of glutamine were related to the combination of intramolecular and intermolecular motions, the intramolecular modes were dominated by rocking or torsion involving functional groups; the intermolecular modes mainly result from the translational motions of individual molecules, and the rocking of the hydrogenbonded functional groups.
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页数:8
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