NMR investigation of Tyr105 mutants in TEM-1 β-lactamase -: Dynamics are correlated with function

被引:29
作者
Doucet, Nicolas
Savard, Pierre-Yves
Pelletier, Joelle N.
Gagne, Stephane M.
机构
[1] Univ Montreal, Dept Chim, Montreal, PQ H3C 3J7, Canada
[2] Univ Laval, Dept Biochim & Microbiol & CREFSIP, Quebec City, PQ G1K 7P4, Canada
[3] Univ Montreal, Dept Biochim, Montreal, PQ H3C 3J7, Canada
关键词
D O I
10.1074/jbc.M609777200
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The existence of coupled residue motions on various time scales in enzymes is now well accepted, and their detailed characterization has become an essential element in understanding the role of dynamics in catalysis. To this day, a handful of enzyme systems has been shown to rely on essential residue motions for catalysis, but the generality of such phenomena remains to be elucidated. Using NMR spectroscopy, we investigated the electronic and dynamic effects of several mutations at position 105 in TEM-1 beta-lactamase, an enzyme responsible for antibiotic resistance. Even in absence of substrate, our results show that the number and magnitude of short and long range effects on H-1-N-15 chemical shifts are correlated with the catalytic efficiencies of the various Y105X mutants investigated. In addition, N-15 relaxation experiments on mutant Y105D show that several active-site residues of TEM-1 display significantly altered motions on both picosecond-nanosecond and microsecond-millisecond time scales despite many being far away from the site of mutation. The altered motions among various active-site residues in mutant Y105D may account for the observed decrease in catalytic efficiency, therefore suggesting that short and long range residue motions could play an important catalytic role in TEM-1 beta-lactamase. These results support previous observations suggesting that internal motions play a role in promoting protein function.
引用
收藏
页码:21448 / 21459
页数:12
相关论文
共 63 条
[1]   Enzymes: An integrated view of structure, dynamics and function [J].
Agarwal, PK .
MICROBIAL CELL FACTORIES, 2006, 5 (1)
[2]   Protein dynamics and enzymatic catalysis: Investigating the peptidyl-prolyl cis-trans isomerization activity of cyclophilin A [J].
Agarwal, PK ;
Geist, A ;
Gorin, A .
BIOCHEMISTRY, 2004, 43 (33) :10605-10618
[3]   Network of coupled promoting motions in enzyme catalysis [J].
Agarwal, PK ;
Billeter, SR ;
Rajagopalan, PTR ;
Benkovic, SJ ;
Hammes-Schiffer, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (05) :2794-2799
[4]   Computational studies of the mechanism for proton and hydride transfer in liver alcohol dehydrogenase [J].
Agarwal, PK ;
Webb, SP ;
Hammes-Schiffer, S .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (19) :4803-4812
[6]   A STANDARD NUMBERING SCHEME FOR THE CLASS-A BETA-LACTAMASES [J].
AMBLER, RP ;
COULSON, AFW ;
FRERE, JM ;
GHUYSEN, JM ;
JORIS, B ;
FORSMAN, M ;
LEVESQUE, RC ;
TIRABY, G ;
WALEY, SG .
BIOCHEMICAL JOURNAL, 1991, 276 :269-270
[7]   A link between protein structure and enzyme catalyzed hydrogen tunneling [J].
Bahnson, BJ ;
Colby, TD ;
Chin, JK ;
Goldstein, BM ;
Klinman, JP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (24) :12797-12802
[8]   Conservation of μs-ms enzyme motions in the apo- and substrate-mimicked state [J].
Beach, H ;
Cole, R ;
Gill, ML ;
Loria, JP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (25) :9167-9176
[9]   A perspective on enzyme catalysis [J].
Benkovic, SJ ;
Hammes-Schiffer, S .
SCIENCE, 2003, 301 (5637) :1196-1202
[10]   Hydride transfer in liver alcohol dehydrogenase: Quantum dynamics, kinetic isotope effects, and role of enzyme motion [J].
Billeter, SR ;
Webb, SP ;
Agarwal, PK ;
Iordanov, T ;
Hammes-Schiffer, S .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (45) :11262-11272