Methyl Phosphate Dianion Hydrolysis in Solution Characterized by Path Collective Variables Coupled with DFT-Based Enhanced Sampling Simulations

被引:28
作者
Branduardi, Davide [1 ]
De Vivo, Marco [1 ]
Rega, Nadia [2 ]
Barone, Vincenzo [3 ,4 ]
Cavalli, Andrea [1 ,5 ]
机构
[1] Italian Inst Technol, Dept Drug Discovery & Dev, I-16163 Genoa, Italy
[2] Complesso Univ Monte S Angelo, Univ Federico II, Dipartimento Chim, I-80126 Naples, Italy
[3] Scuola Normale Super Pisa, I-56126 Pisa, Italy
[4] Ist Nazl Fis Nucl, Sez Pisa, Pisa, Italy
[5] Univ Bologna, Dept Pharmaceut Sci, I-40126 Bologna, Italy
关键词
INITIO MOLECULAR-DYNAMICS; DISSOCIATIVE MECHANISMS; MONOESTER HYDROLYSIS; GAUSSIAN-ORBITALS; DENSITY-MATRIX;
D O I
10.1021/ct100547a
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Herein, we propose a conceptually innovative approach to investigating reaction mechanisms. This study demonstrates the importance of considering explicitly the effects of large amplitude motions, aside from the intrinsic reaction coordinate, when tuning the free energy landscape of reaction pathways. We couple the path collective variables method with DFT-based enhanced sampling simulations to characterize the associative mechanism of the hydrolysis of the methyl phosphate dianion in solution. Importantly, energetics and mechanistic differences are observed when passing from the potential to the free energy surface.
引用
收藏
页码:539 / 543
页数:5
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