Rationalizing α-helical membrane protein crystallization

被引:116
作者
Newstead, Simon [1 ]
Ferrandon, Sebastien [1 ]
Iwata, So [1 ,2 ,3 ]
机构
[1] Imperial Coll London, Wolfson Lab, Div Mol Biosci, MPC Grp, London SW7 2AZ, England
[2] Kyoto Univ, Fac Med, ERATO Human Receptor Crystallograph Project, Kyoto 6068501, Japan
[3] RIKEN, Genom Sci Ctr, Protein Res Grp, Yokohama, Kanagawa 2300045, Japan
关键词
membrane proteins; protein crystallization;
D O I
10.1110/ps.073263108
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
X-ray crystallography is currently the most successful method for determining the three-dimensional structure of membrane proteins. Nevertheless, growing the crystals required for this technique presents one of the major bottlenecks in this area of structural biology. This is especially true for the alpha-helical type membrane proteins that are of particular interest due to their medical relevance. To address this problem we have undertaken a detailed analysis of the crystallization conditions from 121 alpha-helical membrane protein structures deposited in the Protein Data Bank. This information has been analyzed so that the success of different parameters can be easily compared for different membrane protein families. Concurrent with this analysis, we also present the new sparse matrix crystallization screen MemGold.
引用
收藏
页码:466 / 472
页数:7
相关论文
共 18 条
[1]   The crystal structure of the Escherichia coli AmtB-GlnK complex reveals how GlnK regulates the ammonia channel [J].
Conroy, Matthew J. ;
Durand, Anne ;
Lupo, Domenico ;
Li, Xiao-Dan ;
Bullough, Per A. ;
Winkler, Fritz K. ;
Merrick, Mike .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (04) :1213-1218
[2]   Crystal structure of the MgtE Mg2+ transporter [J].
Hattori, Motoyuki ;
Tanaka, Yoshiki ;
Fukai, Shuya ;
Ishitani, Ryuichiro ;
Nureki, Osamu .
NATURE, 2007, 448 (7157) :1072-U13
[3]  
Iwata S., 2003, Methods and results in crystallization o f membrane proteins
[4]   SPARSE-MATRIX SAMPLING - A SCREENING METHOD FOR CRYSTALLIZATION OF PROTEINS [J].
JANCARIK, J ;
KIM, SH .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1991, 24 :409-411
[5]   Molecular basis of proton motive force generation:: Structure of formate dehydrogenase-N [J].
Jormakka, M ;
Törnroth, S ;
Byrne, B ;
Iwata, S .
SCIENCE, 2002, 295 (5561) :1863-1868
[6]   Data mining crystallization databases: Knowledge-based approaches to optimize protein crystal screens [J].
Kimber, MS ;
Vallee, F ;
Houston, S ;
Necakov, A ;
Skarina, T ;
Evdokimova, E ;
Beasley, S ;
Christendat, D ;
Savchenko, A ;
Arrowsmith, CH ;
Vedadi, M ;
Gerstein, M ;
Edwards, AM .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 2003, 51 (04) :562-568
[7]   Functional role and affinity of inorganic cations in stabilizing the tetrameric structure of the KcsA K+ channel [J].
Krishnan, MN ;
Bingham, JP ;
Lee, SH ;
Trombley, P ;
Moczydlowski, E .
JOURNAL OF GENERAL PHYSIOLOGY, 2005, 126 (03) :271-283
[9]   Novel buffer systems for macromolecular crystallization [J].
Newman, J .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :610-612
[10]   High-throughput fluorescent-based optimization of eukaryotic membrane protein overexpression and purification in Saccharomyces cerevisiae [J].
Newstead, Simon ;
Kim, Hyun ;
von Heijne, Gunnar ;
Iwata, So ;
Drew, David .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (35) :13936-13941