Cinchona alkaloid based chiral stationary phases (CSPs) were evaluated and compared for the enantiomer separation of a set of alpha-amino acid derivatives as selectands (SA), using ortho-phthalaldehyde (OPA), naphthalene-2,3-dicarboxaldehyde (NDA) and anthracene-2,3-dicarboxaldehyde (ADA) as reagents in the presence of acetonitrile. Protocols have been developed for the derivatization of most common amino acids in the absence of the usual thiol components (2-mercaptoethanol, mercaptosulphonic acid, sodium sulfite) under acidic and neutral conditions providing the corresponding isoindolin-1-one (phthalimidine) derivatives. They are stable for hours at various reaction conditions compared to thiol or sulfide modified isoindoles resulted by the OPA-thiol reaction type. Among the derivatizing agents, ADA afforded the highest retention factors (k) and for the majority of the analytes also resolution (R-S) and enantioselectivity (alpha) values (i.e. for tryptophan k(1) = 23, R-S = 4.93 and alpha = 1.43). Structure variation of the CSPs and selector (SO), respectively indicates that steric arrangement around the binding cleft plays a major role in the enantiodiscriminating events. To provide more detailed information about the derivatization reaction itself, the proposed mechanism for the formation of the OPA derivative (isoindolin-1-one) was further evaluated by deuterium labeling and LC-MS analysis. (c) 2005 Elsevier B.V. All rights reserved.