A database for cell signaling networks

被引:38
作者
Takai-Igarashi, T
Nadaoka, Y
Kaminuma, T
机构
[1] Natl Inst Hlth Sci, Div Chem Bio Informat, Setagaya Ku, Tokyo 158, Japan
[2] Tokyo Metropolitan Inst Med Sci, Ctr Comp, Tokyo 113, Japan
关键词
cellular signal transduction; object-oriented database;
D O I
10.1089/cmb.1998.5.747
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We developed a data and knowledge base for cellular signal transduction in human cells, to make this rapidly growing information available, The database includes all the biological properties of cellular signal transduction, including biological reactions that transfer cellular signals and molecular attributes characterized by sequences, structures, and functions. Since the database is based on the object-oriented technique, highly flexible methods of data definition and modification are necessary to handle this diverse and complex biological information. The database includes attractive graphical representations of signaling cascades and the three-dimensional structure of molecules. The database is a novel application of ACEDB, which was the database originally developed to store the C, elegans genome, The database can be accessed through the Internet at http: / /geo.nihs.go. jp/csndb.html.
引用
收藏
页码:747 / 754
页数:8
相关论文
共 15 条
[1]  
Alberts B., 1994, MOL BIOL CELL
[2]   The SWISS-PROT protein sequence data bank and its supplement TrEMBL [J].
Bairoch, A ;
Apweller, R .
NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :31-36
[3]   GENBANK [J].
BENSON, D ;
LIPMAN, DJ ;
OSTELL, J .
NUCLEIC ACIDS RESEARCH, 1993, 21 (13) :2963-2965
[4]   GENBANK [J].
BENSON, DA ;
BOGUSKI, M ;
LIPMAN, DJ ;
OSTELL, J .
NUCLEIC ACIDS RESEARCH, 1994, 22 (17) :3441-3444
[5]  
BERNSTEIN FC, 1997, J MOL BIOL, V112, P535
[6]  
BRADLEY J, 1994, RASMOL
[7]   PROTEIN MOLECULES AS COMPUTATIONAL ELEMENTS IN LIVING CELLS [J].
BRAY, D .
NATURE, 1995, 376 (6538) :307-312
[8]  
FRIEL DD, 1993, BIOPHYS J, V64, P77
[9]  
Goto S, 1996, PACIFIC SYMPOSIUM ON BIOCOMPUTING '97, P175
[10]   EcoCyc: Encyclopedia of Escherichia coli genes and metabolism [J].
Karp, PD ;
Riley, M ;
Paley, SM ;
PellegriniToole, A ;
Krummenacker, M .
NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :43-50