genomation: a toolkit to summarize, annotate and visualize genomic intervals

被引：230

作者：

Akalin, Altuna ^{[1
]}

Franke, Vedran ^{[2
]}

Vlahovicek, Kristian ^{[2
,6
]}

Mason, Christopher E. ^{[3
,4
]}

Schuebeler, Dirk ^{[1
,5
]}

机构：

[1] Friedrich Miescher Inst Biomed Res, CH-4058 Basel, Switzerland

[2] Univ Zagreb, Fac Sci, Dept Mol Biol, Bioinformat Grp, Zagreb 10000, Croatia

[3] Weill Cornell Med Coll, Dept Physiol & Biophys, New York, NY 10021 USA

[4] Weill Cornell Med Coll, Inst Computat Biomed, New York, NY 10021 USA

[5] Univ Basel, Fac Sci, CH-4051 Basel, Switzerland

[6] Univ Oslo, Dept Informat, NO-0316 Oslo, Norway

来源：

BIOINFORMATICS | 2015年 / 31卷 / 07期

基金：

欧洲研究理事会;

关键词：

D O I：

10.1093/bioinformatics/btu775

中图分类号：

Q5 [生物化学];

学科分类号：

070307 [化学生物学];

摘要：

A Summary: Biological insights can be obtained through computational integration of genomics data sets consisting of diverse types of information. The integration is often hampered by a large variety of existing file formats, often containing similar information, and the necessity to use complicated tools to achieve the desired results. We have built an R package, genomation, to expedite the extraction of biological information from high throughput data. The package works with a variety of genomic interval file types and enables easy summarization and annotation of high throughput data sets with given genomic annotations.

引用

页码：1127 / 1129

页数：3

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