Universal noninvasive detection of solid organ transplant rejection

被引:281
作者
Snyder, Thomas M. [2 ,3 ,4 ]
Khush, Kiran K. [1 ]
Valantine, Hannah A. [1 ]
Quake, Stephen R. [2 ,3 ,4 ]
机构
[1] Stanford Univ, Sch Med, Div Cardiovasc Med, Stanford, CA 94305 USA
[2] Stanford Univ, Howard Hughes Med Inst, Stanford, CA 94305 USA
[3] Stanford Univ, Dept Appl Phys, Stanford, CA 94305 USA
[4] Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA
基金
美国国家卫生研究院;
关键词
next-generation sequencing; noninvasive diagnosis; acute rejection; CARDIAC ALLOGRAFT-REJECTION; CELL-FREE DNA; ENDOMYOCARDIAL BIOPSY; GENE-EXPRESSION; RENAL-TRANSPLANTATION; RECIPIENTS; DONOR; DIAGNOSIS; KIDNEY; BLOOD;
D O I
10.1073/pnas.1013924108
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
It is challenging to monitor the health of transplanted organs, particularly with respect to rejection by the host immune system. Because transplanted organs have genomes that are distinct from the recipient's genome, we used high throughput shotgun sequencing to develop a universal noninvasive approach to monitoring organ health. We analyzed cell-free DNA circulating in the blood of heart transplant recipients and observed significantly increased levels of cell-free DNA from the donor genome at times when an endomyocardial biopsy independently established the presence of acute cellular rejection in these heart transplant recipients. Our results demonstrate that cell-free DNA can be used to detect an organ-specific signature that correlates with rejection, and this measurement can be made on any combination of donor and recipient. This noninvasive test holds promise for replacing the endomyocardial biopsy in heart transplant recipients and may be applicable to other solid organ transplants.
引用
收藏
页码:6229 / 6234
页数:6
相关论文
共 27 条
[1]  
BARALDIJUNKINS C, 1993, J HEART LUNG TRANSPL, V12, P63
[2]   MORBIDITY OF ENDOMYOCARDIAL BIOPSY IN CARDIAC TRANSPLANT RECIPIENTS [J].
BHAT, G ;
BURWIG, S ;
WALSH, R .
AMERICAN HEART JOURNAL, 1993, 125 (04) :1180-1181
[3]  
BILLINGHAM ME, 1990, J HEART TRANSPLANT, V9, P587
[4]   Endothelial apoptosis and chronic transplant vasculopathy:: Recent results, novel mechanisms [J].
Cailhier, JF ;
Laplante, P ;
Hébert, MJ .
AMERICAN JOURNAL OF TRANSPLANTATION, 2006, 6 (02) :247-253
[5]   Apoptosis and expression of heme oxygenase-1 in heart transplant recipients during acute rejection episode [J].
Chok, R ;
Sénéchal, M ;
Dorent, R ;
Mallat, Z ;
Leprince, P ;
Pavie, A ;
Ghossoub, JJ ;
Gandjbakhch, I .
TRANSPLANTATION PROCEEDINGS, 2002, 34 (07) :2815-2818
[6]   Noninvasive discrimination of rejection in cardiac allograft recipients using gene expression profiling [J].
Deng, MC ;
Eisen, HJ ;
Mehra, MR ;
Billingham, M ;
Marboe, CC ;
Berry, G ;
Kobashigawa, J ;
Johnson, FL ;
Starling, RC ;
Murali, S ;
Pauly, DF ;
Baron, H ;
Wohlgemuth, JG ;
Woodward, RN ;
Klingler, TM ;
Walther, D ;
Lal, PG ;
Rosenberg, S ;
Hunt, S .
AMERICAN JOURNAL OF TRANSPLANTATION, 2006, 6 (01) :150-160
[7]   The economic implications of noninvasive molecular testing for cardiac allograft rejection [J].
Evans, RW ;
Williams, GE ;
Baron, HM ;
Deng, MC ;
Eisen, HJ ;
Hunt, SA ;
Khan, MM ;
Kobashigawa, JA ;
Marton, EN ;
Mehra, MR ;
Mital, SR .
AMERICAN JOURNAL OF TRANSPLANTATION, 2005, 5 (06) :1553-1558
[8]   Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood [J].
Fan, H. Christina ;
Blumenfeld, Yair J. ;
Chitkara, Usha ;
Hudgins, Louanne ;
Quake, Stephen R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (42) :16266-16271
[9]   Microfluidic digital PCR enables rapid prenatal diagnosis of fetal aneuploidy [J].
Fan, H. Christina ;
Blumenfeld, Yair J. ;
El-Sayed, Yasser Y. ;
Chueh, Jane ;
Quake, Stephen R. .
AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY, 2009, 200 (05) :543.e1-543.e7
[10]   A second generation human haplotype map of over 3.1 million SNPs [J].
Frazer, Kelly A. ;
Ballinger, Dennis G. ;
Cox, David R. ;
Hinds, David A. ;
Stuve, Laura L. ;
Gibbs, Richard A. ;
Belmont, John W. ;
Boudreau, Andrew ;
Hardenbol, Paul ;
Leal, Suzanne M. ;
Pasternak, Shiran ;
Wheeler, David A. ;
Willis, Thomas D. ;
Yu, Fuli ;
Yang, Huanming ;
Zeng, Changqing ;
Gao, Yang ;
Hu, Haoran ;
Hu, Weitao ;
Li, Chaohua ;
Lin, Wei ;
Liu, Siqi ;
Pan, Hao ;
Tang, Xiaoli ;
Wang, Jian ;
Wang, Wei ;
Yu, Jun ;
Zhang, Bo ;
Zhang, Qingrun ;
Zhao, Hongbin ;
Zhao, Hui ;
Zhou, Jun ;
Gabriel, Stacey B. ;
Barry, Rachel ;
Blumenstiel, Brendan ;
Camargo, Amy ;
Defelice, Matthew ;
Faggart, Maura ;
Goyette, Mary ;
Gupta, Supriya ;
Moore, Jamie ;
Nguyen, Huy ;
Onofrio, Robert C. ;
Parkin, Melissa ;
Roy, Jessica ;
Stahl, Erich ;
Winchester, Ellen ;
Ziaugra, Liuda ;
Altshuler, David ;
Shen, Yan .
NATURE, 2007, 449 (7164) :851-U3