The structure of an AspRS-tRNAAsp complex reveals a tRNA-dependent control mechanism

被引:84
作者
Moulinier, L
Eiler, S
Eriani, G
Gangloff, J
Thierry, JC
Gabriel, K
McClain, WH
Moras, D
机构
[1] ULP, CNRS INSERM, Inst Genet & Biol Mol & Cellulaire, UPR 9004,Lab Biol & Genom Struct, F-67404 Illkirch Graffenstaden, France
[2] IBMC, UPR 9002, F-67084 Strasbourg, France
[3] Univ Wisconsin, Dept Bacteriol, Madison, WI 53706 USA
关键词
aminoacylation reaction; crystal structure; protein-RNA recognition; species specificity;
D O I
10.1093/emboj/20.18.5290
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The 2.6 Angstrom resolution crystal structure of an inactive complex between yeast tRNA(Asp) and Escherichia coli aspartyl-tRNA synthetase reveals the molecular details of a tRNA-induced mechanism that controls the specificity of the reaction. The dimer is asymmetric, with only one of the two bound tRNAs entering the active site cleft of its subunit. However, the flipping loop, which controls the proper positioning of the amino acid substrate, acts as a lid and prevents the correct positioning of the terminal adenosine. The structure suggests that the acceptor stem regulates the loop movement through sugar phosphate backbone-protein interactions. Solution and cellular studies on mutant tRNAs confirm the crucial role of the tRNA three-dimensional structure versus a specific recognition of bases in the control mechanism.
引用
收藏
页码:5290 / 5301
页数:12
相关论文
共 34 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   Crystallization of Escherichia coli aspartyl-tRNA synthetase in its free state and in a complex with yeast tRNA(Asp) [J].
Boeglin, M ;
DockBregeon, AC ;
Eriani, G ;
Gangloff, J ;
Ruff, M ;
Poterszman, A ;
Mitschler, A ;
Thierry, JC ;
Moras, D .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1996, 52 :211-214
[3]   An intermediate step in the recognition of tRNAAsp by Aspartyl-tRNA synthetase [J].
Briand, C ;
Poterszman, A ;
Eiler, S ;
Webster, G ;
Thierry, JC ;
Moras, D .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 299 (04) :1051-1060
[4]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[5]   THE ACTIVE-SITE OF YEAST ASPARTYL-TRANSFER-RNA SYNTHETASE - STRUCTURAL AND FUNCTIONAL-ASPECTS OF THE AMINOACYLATION REACTION [J].
CAVARELLI, J ;
ERIANI, G ;
REES, B ;
RUFF, M ;
BOEGLIN, M ;
MITSCHLER, A ;
MARTIN, F ;
GANGLOFF, J ;
THIERRY, JC ;
MORAS, D .
EMBO JOURNAL, 1994, 13 (02) :327-337
[6]   Correlation of deformability at a tRNA recognition site and aminoacylation specificity [J].
Chang, KY ;
Varani, G ;
Bhattacharya, S ;
Choi, H ;
McClain, WH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (21) :11764-11769
[7]   CRYSTALLIZATION OF TRANSFER RIBONUCLEIC-ACIDS [J].
DOCK, AC ;
LORBER, B ;
MORAS, D ;
PIXA, G ;
THIERRY, JC ;
GIEGE, R .
BIOCHIMIE, 1984, 66 (03) :179-201
[8]  
DODSON EJ, 1985, MOL REPLACEMENT, P33
[9]   Synthesis of aspartyl-tRNAAsp in Escherichia coli -: a snapshot of the second step [J].
Eiler, S ;
Dock-Bregeon, AC ;
Moulinier, L ;
Thierry, JC ;
Moras, D .
EMBO JOURNAL, 1999, 18 (22) :6532-6541
[10]   ASPARTYL-TRANSFER RNA-SYNTHETASE FROM ESCHERICHIA-COLI - CLONING AND CHARACTERIZATION OF THE GENE, HOMOLOGIES OF ITS TRANSLATED AMINO-ACID-SEQUENCE WITH ASPARAGINYL-TRANSFER RNA AND LYSYL-TRANSFER RNA-SYNTHETASES [J].
ERIANI, G ;
DIRHEIMER, G ;
GANGLOFF, J .
NUCLEIC ACIDS RESEARCH, 1990, 18 (23) :7109-7118