Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution

被引:219
作者
Haygood, Ralph [1 ]
Fedrigo, Olivier
Hanson, Brian
Yokoyama, Ken-Daigoro
Awray, Gregory
机构
[1] Duke Univ, Dept Biol, Durham, NC 27708 USA
[2] Duke Univ, Inst Genome Sci & Policy, Durham, NC 27708 USA
关键词
D O I
10.1038/ng2104
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Surveys of protein- coding sequences for evidence of positive selection in humans or chimpanzees have flagged only a few genes known to function in neural or nutritional processes(1-5), despite pronounced differences between humans and chimpanzees in behavior, cognition and diet(6-8). It may be that most such differences are due to changes in gene regulation rather than protein structure(9). Here, we present the first survey of promoter ( 5'- flanking) regions, which are rich in cis-regulatory sequences, for evidence of positive selection in humans. Our results indicate that positive selection has targeted the regulation of many genes known to be involved in neural development and function, both in the brain and elsewhere in the nervous system, and in nutrition, particularly in glucose metabolism.
引用
收藏
页码:1140 / 1144
页数:5
相关论文
共 30 条
[1]   Language evolution: What do chimpanzees have to say? [J].
Arcadi, AC .
CURRENT BIOLOGY, 2005, 15 (21) :R884-R886
[2]   Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression [J].
Blanchette, M ;
Bataille, AR ;
Chen, XY ;
Poitras, C ;
Laganière, J ;
Lefèbvre, C ;
Deblois, G ;
Giguère, V ;
Ferretti, V ;
Bergeron, D ;
Coulombe, B ;
Robert, FO .
GENOME RESEARCH, 2006, 16 (05) :656-668
[3]   Natural selection on protein-coding genes in the human genome [J].
Bustamante, CD ;
Fledel-Alon, A ;
Williamson, S ;
Nielsen, R ;
Hubisz, MT ;
Glanowski, S ;
Tanenbaum, DM ;
White, TJ ;
Sninsky, JJ ;
Hernandez, RD ;
Civello, D ;
Adams, MD ;
Cargill, M ;
Clark, AG .
NATURE, 2005, 437 (7062) :1153-1157
[4]   Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios [J].
Clark, AG ;
Glanowski, S ;
Nielsen, R ;
Thomas, PD ;
Kejariwal, A ;
Todd, MA ;
Tanenbaum, DM ;
Civello, D ;
Lu, F ;
Murphy, B ;
Ferriera, S ;
Wang, G ;
Zheng, XG ;
White, TJ ;
Sninsky, JJ ;
Adams, MD ;
Cargill, M .
SCIENCE, 2003, 302 (5652) :1960-1963
[5]   Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS) [J].
Crawford, GE ;
Holt, IE ;
Whittle, J ;
Webb, BD ;
Tai, D ;
Davis, S ;
Margulies, EH ;
Chen, YD ;
Bernat, JA ;
Ginsburg, D ;
Zhou, DX ;
Luo, SJ ;
Vasicek, TJ ;
Daly, MJ ;
Wolfsberg, TG ;
Collins, FS .
GENOME RESEARCH, 2006, 16 (01) :123-131
[6]   Selection on human genes as revealed by comparisons to chimpanzee cDNA [J].
Hellmann, I ;
Zöllner, S ;
Enard, W ;
Ebersberger, I ;
Nickel, B ;
Pääbo, S .
GENOME RESEARCH, 2003, 13 (05) :831-837
[7]   What's so special about human tool use? [J].
Johnson-Frey, SH .
NEURON, 2003, 39 (02) :201-204
[8]   Evidence for widespread degradation of gene control regions in hominid genomes [J].
Keightley, PD ;
Lercher, MJ ;
Eyre-Walker, A .
PLOS BIOLOGY, 2005, 3 (02) :282-288
[9]   Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees [J].
Khaitovich, P ;
Hellmann, I ;
Enard, W ;
Nowick, K ;
Leinweber, M ;
Franz, H ;
Weiss, G ;
Lachmann, M ;
Pääbo, S .
SCIENCE, 2005, 309 (5742) :1850-1854
[10]   EVOLUTION AT 2 LEVELS IN HUMANS AND CHIMPANZEES [J].
KING, MC ;
WILSON, AC .
SCIENCE, 1975, 188 (4184) :107-116