ESTAP - an automated system for the analysis of EST data

被引：39

作者：

Mao, CH ^{[1
]}

Cushman, JC

May, GD

Weller, JW

机构：

[1] Virginia Polytech Inst & State Univ, Virginia Bioinformat Inst, Blacksburg, VA 24061 USA

[2] Univ Nevada, Dept Biochem, Reno, NV 89557 USA

[3] Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73402 USA

[4] George Mason Univ, Sch Computat Sci, Manassas, VA 20110 USA

来源：

BIOINFORMATICS | 2003年 / 19卷 / 13期

关键词：

D O I：

10.1093/bioinformatics/btg205

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The EST Analysis Pipeline (ESTAP) is a set of analytical procedures that automatically verify, cleanse, store and analyze ESTs generated on high-throughput platforms. It uses a relational database to store sequence data and analysis results, which facilitates both the search for specific information and statistical analysis. ESTAP provides for easy viewing of the original and cleansed data, as well as the analysis results via a Web browser. It also allows the data owner to submit selected sequences to dbEST in a semi-automated fashion.

引用

页码：1720 / 1722

页数：3

共 6 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, SF
Madden, TL
Schaffer, AA
Zhang, JH
Zhang, Z
Miller, W
Lipman, DJ
[J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
[2] STACK: Sequence Tag Alignment and Consensus Knowledgebase
Christoffels, A
van Gelder, A
Greyling, G
Miller, R
Hide, T
Hide, W
[J]. NUCLEIC ACIDS RESEARCH, 2001, 29 (01) : 234 - 238
[3] Base-calling of automated sequencer traces using phred.: II.: Error probabilities
Ewing, B
Green, P
[J]. GENOME RESEARCH, 1998, 8 (03): : 186 - 194
[4] Base-calling of automated sequencer traces using phred.: I.: Accuracy assessment
Ewing, B
Hillier, L
Wendl, MC
Green, P
[J]. GENOME RESEARCH, 1998, 8 (03): : 175 - 185
[5] Hide W, 1994, J Comput Biol, V1, P199, DOI 10.1089/cmb.1994.1.199
[6] CAP3: A DNA sequence assembly program
Huang, XQ
Madan, A
[J]. GENOME RESEARCH, 1999, 9 (09) : 868 - 877

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