CGH-Plotter: MATLAB toolbox for CGH-data analysis

被引：84

作者：

Autio, R

Hautaniemi, S

Kauraniemi, P

Yli-Harja, O

Astola, J

Wolf, M

Kallioniemi, A

机构：

[1] Tampere Univ Technol, Inst Signal Proc, FIN-33101 Tampere, Finland

[2] VTT Tech Res Ctr Finland, Med Biotechnol Grp, FIN-20521 Turku, Finland

[3] Univ Tampere, Inst Med Technol, Canc Genet Lab, FIN-33520 Tampere, Finland

[4] Tampere Univ Hosp, FIN-33520 Tampere, Finland

来源：

BIOINFORMATICS | 2003年 / 19卷 / 13期

关键词：

D O I：

10.1093/bioinformatics/btg230

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

CGH-Plotter is a MATLAB toolbox with a graphical user interface for the analysis of comparative genomic hybridization (CGH) microarray data. CGH-Plotter provides a tool for rapid visualization of CGH-data according to the locations of the genes along the genome. In addition, the CGH-Plotter identifies regions of amplifications and deletions, using k-means clustering and dynamic programming. The application offers a convenient way to analyze CGH-data and can also be applied for the analysis of cDNA microarray expression data. CGH-Plotter toolbox is platform independent and requires MATLAB 6.1 or higher to operate.

引用

页码：1714 / 1715

页数：2

共 3 条

[1] Genome changes and gene expression in human solid tumors [J].