Recommendations for the presentation of NMR structures of proteins and Nucleic Acids (Reprinted from Pure and Applied Chemistry, vol 70, pgs 117-142, 1998)

被引:199
作者
Markley, JL
Bax, A
Arata, Y
Hilbers, CW
Kaptein, R
Sykes, BD
Wright, PE
Wüthrich, K
机构
[1] ETH Honggerberg, Inst Mol Biol, CH-8093 Zurich, Switzerland
[2] Univ Wisconsin, Dept Biochem, Madison, WI USA
[3] NIDDK, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
[4] Water Res Inst, Tsukuba, Ibaraki, Japan
[5] Univ Nijmegen, Biophys Chem Lab, Nijmegen, Netherlands
[6] Univ Utrecht, Dept Chem, NL-3508 TC Utrecht, Netherlands
[7] Univ Alberta, Dept Biochem, Edmonton, AB, Canada
[8] Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
关键词
atom naming; biomolecular NMR; chemical shift referencing; database; deposition; nomenclature;
D O I
10.1006/jmbi.1998.1852
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The recommendations presented here are designed to support easier communication of NMR data and NMR structures of proteins and nucleic acids through unified nomenclature and reporting standards. Much of this document pertains to the reporting of data in journal articles; however, in the interest of the future development of structural biology, it is desirable that the bulk of the reported information be stored in computer-accessible form and be freely accessible to the scientific community in standardized formats for data exchange. These recommendations stem from an IUPAC-IUBMB-IUPAB inter-union venture with the direct involvement of ICSU and CODATA. The Task Group has reviewed previous formal recommendations and has extended them in the light of more recent developments in the field of biomolecular NMR spectroscopy. Drafts of the recommendations presented here have been examined critically by more than 50 specialists in the field and have gone through two rounds of extensive modification to incorporate suggestions and criticisms. (C) 1998 Academic Press.
引用
收藏
页码:933 / 952
页数:20
相关论文
共 63 条
  • [1] [Anonymous], 1970, BIOCHEMISTRY-US, DOI DOI 10.1021/BI00820A001
  • [2] [Anonymous], [No title captured]
  • [3] [Anonymous], ENZ NOM REC 1992
  • [4] THE NUCLEIC-ACID DATABASE - A COMPREHENSIVE RELATIONAL DATABASE OF 3-DIMENSIONAL STRUCTURES OF NUCLEIC-ACIDS
    BERMAN, HM
    OLSON, WK
    BEVERIDGE, DL
    WESTBROOK, J
    GELBIN, A
    DEMENY, T
    HSIEH, SH
    SRINIVASAN, AR
    SCHNEIDER, B
    [J]. BIOPHYSICAL JOURNAL, 1992, 63 (03) : 751 - 759
  • [5] PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES
    BERNSTEIN, FC
    KOETZLE, TF
    WILLIAMS, GJB
    MEYER, EF
    BRICE, MD
    RODGERS, JR
    KENNARD, O
    SHIMANOUCHI, T
    TASUMI, M
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) : 535 - 542
  • [6] UNIQUE AND UNAMBIGUOUS SPECIFICATION OF STEREOISOMERISM ABOUT A DOUBLE BOND IN NOMENCLATURE AND OTHER NOTATION SYSTEMS
    BLACKWOOD, JE
    GLADYS, CL
    PETRARCA, AE
    POWELL, WH
    RUSH, JE
    [J]. JOURNAL OF CHEMICAL DOCUMENTATION, 1968, 8 (01): : 30 - +
  • [7] UNAMBIGUOUS SPECIFICATION OF STEREOISOMERISM ABOUT A DOUBLE BOND
    BLACKWOOD, JE
    GLADYS, CL
    LOENING, KL
    PETRARCA, AE
    RUSH, JE
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1968, 90 (02) : 509 - +
  • [8] BONNETT R, 1978, PORPHYRINS A, V1
  • [9] SPECIFICATION OF MOLECULAR CHIRALITY
    CAHN, RS
    INGOLD, C
    PRELOG, V
    [J]. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 1966, 5 (04) : 385 - &
  • [10] CLAUWAERT J, 1993, TRENDS BIOCHEM SCI, V18, P317