myExperiment: a repository and social network for the sharing of bioinformatics workflows

被引：153

作者：

Goble, Carole A. ^{[1
]}

Bhagat, Jiten ^{[1
]}

Aleksejevs, Sergejs ^{[1
]}

Cruickshank, Don ^{[2
]}

Michaelides, Danius ^{[2
]}

Newman, David ^{[2
]}

Borkum, Mark ^{[2
]}

Bechhofer, Sean ^{[1
]}

Roos, Marco ^{[3
,4
]}

Li, Peter ^{[1
]}

De Roure, David ^{[2
]}

机构：

[1] Univ Manchester, Sch Comp Sci, Manchester M13 9PL, Lancs, England

[2] Univ Southampton, Sch Elect & Comp Sci, Southampton SO17 1BJ, Hants, England

[3] Leiden Univ, Med Ctr, BioSemant Grp, Dept Human Genet, NL-2333 ZA Leiden, Netherlands

[4] Univ Amsterdam, Adapt Informat Disclosure Grp, Inst Informat, NL-1098 SJ Amsterdam, Netherlands

来源：

NUCLEIC ACIDS RESEARCH | 2010年 / 38卷

基金：

英国工程与自然科学研究理事会;

关键词：

WEB SERVICES; TAVERNA; BIOLOGY;

D O I：

10.1093/nar/gkq429

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

myExperiment (http://www.myexperiment.org) is an online research environment that supports the social sharing of bioinformatics workflows. These workflows are procedures consisting of a series of computational tasks using web services, which may be performed on data from its retrieval, integration and analysis, to the visualization of the results. As a public repository of workflows, myExperiment allows anybody to discover those that are relevant to their research, which can then be reused and repurposed to their specific requirements. Conversely, developers can submit their workflows to myExperiment and enable them to be shared in a secure manner. Since its release in 2007, myExperiment currently has over 3500 registered users and contains more than 1000 workflows. The social aspect to the sharing of these workflows is facilitated by registered users forming virtual communities bound together by a common interest or research project. Contributors of workflows can build their reputation within these communities by receiving feedback and credit from individuals who reuse their work. Further documentation about myExperiment including its REST web service is available from http://wiki.myexperiment.org. Feedback and requests for support can be sent to bugs@myexperiment.org.

引用

页码：W677 / W682

页数：6

共 27 条

[1]

Altintas I, 2004, 16TH INTERNATIONAL CONFERENCE ON SCIENTIFIC AND STATISTICAL DATABASE MANAGEMENT, PROCEEDINGS, P423

[2]

AZIZ M, 2008, P 1 INT WORKSH RES D, P462

[3] The design and realisation of the myExperiment Virtual Research Environment for social sharing of workflows [J].

De Roure, David ;

Goble, Carole ;

StevenS, Robert .

FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 2009, 25 (05) :561-567

[4]

DEROURE D, 2010, CONCURR COMPUT

[5]

DEROURE D, 2009, MICR ESCIENCE WORKSH

[6] A systematic strategy for large-scale analysis of genotype-phenotype correlations: identification of candidate genes involved in African trypanosomiasis [J].

Fisher, Paul ;

Hedeler, Cornelia ;

Wolstencroft, Katherine ;

Hulme, Helen ;

Noyes, Harry ;

Kemp, Stephen ;

Stevens, Robert ;

Brass, Andrew .

NUCLEIC ACIDS RESEARCH, 2007, 35 (16) :5625-5633

[7]

GOBLE C, 2008, MICR ESCIENCE WORKSH

[8] Taverna: a tool for building and running workflows of services [J].

Hull, Duncan ;

Wolstencroft, Katy ;

Stevens, Robert ;

Goble, Carole ;

Pocock, Mathew R. ;

Li, Peter ;

Oinn, Tom .

NUCLEIC ACIDS RESEARCH, 2006, 34 :W729-W732

[9]

Jacobsen A, 2010, BMC BIOINFORMATICS, V11, DOI 10.1186/1471-2105-11-29

[10] From genomics to chemical genomics: new developments in KEGG [J].

Kanehisa, Minoru ;

Goto, Susumu ;

Hattori, Masahiro ;

Aoki-Kinoshita, Kiyoko F. ;

Itoh, Masumi ;

Kawashima, Shuichi ;

Katayama, Toshiaki ;

Araki, Michihiro ;

Hirakawa, Mika .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D354-D357

← 1 2 3 →