rQuant.web: a tool for RNA-Seq-based transcript quantitation

被引：46

作者：

Bohnert, Regina ^{[1
]}

Raetsch, Gunnar ^{[1
]}

机构：

[1] Max Planck Gesell, Friedrich Miescher Lab, Tubingen, Germany

来源：

NUCLEIC ACIDS RESEARCH | 2010年 / 38卷

关键词：

EXPRESSION;

D O I：

10.1093/nar/gkq448

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

070307 [化学生物学]; 071010 [生物化学与分子生物学];

摘要：

We provide a novel web service, called rQuant.web, allowing convenient access to tools for quantitative analysis of RNA sequencing data. The underlying quantitation technique rQuant is based on quadratic programming and estimates different biases induced by library preparation, sequencing and read mapping. It can tackle multiple transcripts per gene locus and is therefore particularly well suited to quantify alternative transcripts. rQuant. web is available as a tool in a Galaxy installation at http://galaxy.fml.mpg.de. Using rQuant. web is free of charge, it is open to all users, and there is no login requirement.

引用

页码：W348 / W351

页数：4

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