Crystal structure of Ufc1, the Ufm1-conjugating enzyme

被引:41
作者
Mizushima, Tsunehiro
Tatsumi, Kanako
Ozaki, Yoko
Kawakami, Tatsukuni
Suzuki, Atsuo
Ogasahara, Kyoko
Komatsu, Masaaki
Kominami, Eiki
Tanaka, Keiji [1 ]
Yamane, Takashi
机构
[1] Tokyo Metropolitan Inst Med Sci, Lab Frontier Sci, Bunkyo Ku, Tokyo 1138613, Japan
[2] Nagoya Univ, Grad Sch Engn, Dept Biotechnol, Chikusa Ku, Nagoya, Aichi 4648603, Japan
[3] Osaka Univ, Inst Protein Res, Suita, Osaka 5650871, Japan
[4] Juntendo Univ, Sch Med, Dept Biochem, Tokyo 1138421, Japan
[5] Japan Sci & Technol Corp, PRESTO, Kawaguchi 3320012, Japan
关键词
Ufm1; Ufc1; crystal structure; ubiquitin; E2;
D O I
10.1016/j.bbrc.2007.08.129
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ubiquitin and ubiquitin-like protein-conjugating enzymes play central roles in posttranslational modification processes. The ubiquitin-fold modifier I (Ufm1), one of a variety of ubiquitin-like modifiers, is covalently attached to target proteins via Uba5 and Ufm1-conjugating enzyme 1 (Ufc1), which are analogous to the El and E2 ubiquitylation enzymes. As Ufm1-related proteins are conserved in metazoa and plants, the Ufm1 system likely plays important roles in various multicellular organisms. Herein, we report the X-ray structure of human Ufc1 determined at 1.6 angstrom resolution. The UM structure comprises a canonical E2 domain and an additional N-terminal domain. The Uba5 binding site on Ufc1 was assigned by structural comparison of Ufc1 and Ubc12 and related mutational analyses. In addition, we show that the N-terminal unique domain of UM contributes to thermal stability. (C) 2007 Elsevier Inc. All rights reserved.
引用
收藏
页码:1079 / 1084
页数:6
相关论文
共 29 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   Generation, representation and flow of phase information in structure determination:: recent developments in and around SHARP 2.0 [J].
Bricogne, G ;
Vonrhein, C ;
Flensburg, C ;
Schiltz, M ;
Paciorek, W .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2003, 59 :2023-2030
[3]   The ubiquitin system [J].
Hershko, A ;
Ciechanover, A .
ANNUAL REVIEW OF BIOCHEMISTRY, 1998, 67 :425-479
[4]   DaliLite workbench for protein structure comparison [J].
Holm, L ;
Park, J .
BIOINFORMATICS, 2000, 16 (06) :566-567
[5]   Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affinity [J].
Huang, Danny T. ;
Hunt, Harold W. ;
Zhuang, Min ;
Ohi, Melanie D. ;
Holton, James M. ;
Schulman, Brenda A. .
NATURE, 2007, 445 (7126) :394-398
[6]   Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1 [J].
Huang, DT ;
Paydar, A ;
Zhuang, M ;
Waddell, MB ;
Holton, JM ;
Schulman, BA .
MOLECULAR CELL, 2005, 17 (03) :341-350
[7]   Ubiquitin and its kin: how close are the family ties? [J].
Jentsch, S ;
Pyrowolakis, G .
TRENDS IN CELL BIOLOGY, 2000, 10 (08) :335-342
[8]   SOLUTION FOR BEST ROTATION TO RELATE 2 SETS OF VECTORS [J].
KABSCH, W .
ACTA CRYSTALLOGRAPHICA SECTION A, 1976, 32 (SEP1) :922-923
[9]   Two novel ubiquitin-fold modifier 1 (Ufm1)-specific proteases, UfSP1 and UfSP2 [J].
Kang, Sung Hwan ;
Kim, Gi Ryang ;
Seong, Minu ;
Baek, Sung Hee ;
Seol, Jae Hong ;
Bang, Ok Sun ;
Ovaa, Huib ;
Tatsumi, Kanako ;
Komatsu, Masaaki ;
Tanaka, Keiji ;
Chung, Chin Ha .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (08) :5256-5262
[10]   A novel protein-conjugating system for Ufm1, a ubiquitin-fold modifier [J].
Komatsu, M ;
Chiba, T ;
Tatsumi, K ;
Iemura, S ;
Tanida, I ;
Okazaki, N ;
Ueno, T ;
Kominami, E ;
Natsume, T ;
Tanaka, K .
EMBO JOURNAL, 2004, 23 (09) :1977-1986