A deoxyribozyme-based molecular automaton

被引:457
作者
Stojanovic, MN
Stefanovic, D
机构
[1] Columbia Univ, Dept Med, Div Clin Pharmacol & Expt Therapeut, New York, NY 10032 USA
[2] Univ New Mexico, Farris Engn Ctr 157, Dept Comp Sci, Albuquerque, NM 87131 USA
关键词
D O I
10.1038/nbt862
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
We describe a molecular automaton, called MAYA, which encodes a version of the game of tic-tac-toe and interactively competes against a human opponent. The automaton is a Boolean network of deoxyribozymes that incorporates 23 molecular-scale logic gates and one constitutively active deoxyribozyme arrayed in nine wells (3 x 3) corresponding to the game board. To make a move, MAYA carries out an analysis of the input oligonucleotide keyed to a particular move by the human opponent and indicates a move by fluorescence signaling in a response well. The cycle of human player input and automaton response continues until there is a draw or a victory for the automaton. The automaton cannot be defeated because it implements a perfect strategy.
引用
收藏
页码:1069 / 1074
页数:6
相关论文
共 32 条
  • [1] Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli
    Atkinson, MR
    Savageau, MA
    Myers, JT
    Ninfa, AJ
    [J]. CELL, 2003, 113 (05) : 597 - 607
  • [2] Chemistry meets computing
    Ball, P
    [J]. NATURE, 2000, 406 (6792) : 118 - 120
  • [3] DNA molecule provides a computing machine with both data and fuel
    Benenson, Y
    Adar, R
    Paz-Elizur, T
    Livneh, Z
    Shapiro, E
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (05) : 2191 - 2196
  • [4] Programmable and autonomous computing machine made of biomolecules
    Benenson, Y
    Paz-Elizur, T
    Adar, R
    Keinan, E
    Livneh, Z
    Shapiro, E
    [J]. NATURE, 2001, 414 (6862) : 430 - 434
  • [5] Act natural
    Benner, SA
    [J]. NATURE, 2003, 421 (6919) : 118 - 118
  • [6] Solution of a 20-variable 3-SAT problem on a DNA computer
    Braich, RS
    Chelyapov, N
    Johnson, C
    Rothemund, PWK
    Adleman, L
    [J]. SCIENCE, 2002, 296 (5567) : 499 - 502
  • [7] A DNA ENZYME WITH MG2+-DEPENDENT RNA PHOSPHOESTERASE ACTIVITY
    BREAKER, RR
    JOYCE, GF
    [J]. CHEMISTRY & BIOLOGY, 1995, 2 (10): : 655 - 660
  • [8] DNA computation
    Cox, JC
    Ellington, AD
    [J]. CURRENT BIOLOGY, 2001, 11 (09) : R336 - R336
  • [9] Integration of logic functions and sequential operation of gates at the molecular-scale
    de Silva, AP
    Dixon, IM
    Gunaratne, HQN
    Gunnlaugsson, T
    Maxwell, PRS
    Rice, TE
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (06) : 1393 - 1394
  • [10] A synthetic oscillatory network of transcriptional regulators
    Elowitz, MB
    Leibler, S
    [J]. NATURE, 2000, 403 (6767) : 335 - 338