Capturing the dynamic epigenome

被引:34
作者
Deal, Roger B. [1 ]
Henikoff, Steven [1 ,2 ]
机构
[1] Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA
[2] Howard Hughes Med Inst, Seattle, WA 98109 USA
关键词
HISTONE VARIANT H3.3; CHROMATIN-STRUCTURE; IN-VIVO; SACCHAROMYCES-CEREVISIAE; NUCLEOSOME ORGANIZATION; GENE-EXPRESSION; BUDDING YEAST; HUMAN GENOME; HUMAN-CELLS; TRANSCRIPTION;
D O I
10.1186/gb-2010-11-10-218
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 [微生物学]; 090105 [作物生产系统与生态工程];
摘要
Traditional methods for epigenomic analysis provide a static picture of chromatin, which is actually a highly dynamic assemblage. Recent approaches have allowed direct measurements of chromatin dynamics, providing deeper insights into processes such as transcription, DNA replication and epigenetic inheritance.
引用
收藏
页数:8
相关论文
共 60 条
[1]
Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila [J].
Ahmad, K ;
Henikoff, S .
CELL, 2001, 104 (06) :839-847
[2]
The complex language of chromatin regulation during transcription [J].
Berger, Shelley L. .
NATURE, 2007, 447 (7143) :407-412
[3]
Chromatin remodeling complexes: strength in diversity, precision through specialization [J].
Cairns, BR .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2005, 15 (02) :185-190
[4]
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription [J].
Carrozza, MJ ;
Li, B ;
Florens, L ;
Suganuma, T ;
Swanson, SK ;
Lee, KK ;
Shia, WJ ;
Anderson, S ;
Yates, J ;
Washburn, MP ;
Workman, JL .
CELL, 2005, 123 (04) :581-592
[5]
Relationship between nucleosome positioning and DNA methylation [J].
Chodavarapu, Ramakrishna K. ;
Feng, Suhua ;
Bernatavichute, Yana V. ;
Chen, Pao-Yang ;
Stroud, Hume ;
Yu, Yanchun ;
Hetzel, Jonathan A. ;
Kuo, Frank ;
Kim, Jin ;
Cokus, Shawn J. ;
Casero, David ;
Bernal, Maria ;
Huijser, Peter ;
Clark, Amander T. ;
Kraemer, Ute ;
Merchant, Sabeeha S. ;
Zhang, Xiaoyu ;
Jacobsen, Steven E. ;
Pellegrini, Matteo .
NATURE, 2010, 466 (7304) :388-392
[6]
Genome-Wide Kinetics of Nucleosome Turnover Determined by Metabolic Labeling of Histones [J].
Deal, Roger B. ;
Henikoff, Jorja G. ;
Henikoff, Steven .
SCIENCE, 2010, 328 (5982) :1161-1164
[7]
Dynamics of replication-independent histone turnover in budding yeast [J].
Dion, Michael F. ;
Kaplan, Tommy ;
Kim, Minkyu ;
Buratowski, Stephen ;
Friedman, Nir ;
Rando, Oliver J. .
SCIENCE, 2007, 315 (5817) :1405-1408
[8]
The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3.3 [J].
Drane, Pascal ;
Ouararhni, Khalid ;
Depaux, Arnaud ;
Shuaib, Muhammad ;
Hamiche, Ali .
GENES & DEVELOPMENT, 2010, 24 (12) :1253-1265
[9]
The origin recognition complex protein family [J].
Duncker, Bernard P. ;
Chesnokov, Igor N. ;
McConkey, Brendan J. .
GENOME BIOLOGY, 2009, 10 (03) :214
[10]
Ring1B Compacts Chromatin Structure and Represses Gene Expression Independent of Histone Ubiquitination [J].
Eskeland, Ragnhild ;
Leeb, Martin ;
Grimes, Graeme R. ;
Kress, Clemence ;
Boyle, Shelagh ;
Sproul, Duncan ;
Gilbert, Nick ;
Fan, Yuhong ;
Skoultchi, Arthur I. ;
Wutz, Anton ;
Bickmore, Wendy A. .
MOLECULAR CELL, 2010, 38 (03) :452-464