A collection of well characterised integral membrane proteins

被引：69

作者：

Möller, S ^{[1
]}

Kriventseva, EV ^{[1
]}

Apweiler, R ^{[1
]}

机构：

[1] European Bioinformat Inst, Cambridge, England

来源：

BIOINFORMATICS | 2000年 / 16卷 / 12期

关键词：

D O I：

10.1093/bioinformatics/16.12.1159

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

A collection of transmembrane proteins with annotated transmembrane regions, for which good experimental evidence exist, was created as a test or training set for algorithms to predict transmembrane regions in proteins.

引用

页码：1159 / 1160

页数：2

共 12 条

[1] The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 [J].

Bairoch, A ;

Apweiler, R .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :45-48

[2] Significance of Z-value statistics of Smith-Waterman scores for protein alignments [J].

Comet, JP ;

Aude, JC ;

Glémet, E ;

Risler, JL ;

Hénaut, A ;

Slonimski, PP ;

Codani, JJ .

COMPUTERS & CHEMISTRY, 1999, 23 (3-4) :317-331

[3] Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method [J].

Cserzo, M ;

Wallin, E ;

Simon, I ;

vonHeijne, G ;

Elofsson, A .

PROTEIN ENGINEERING, 1997, 10 (06) :673-676

[4] SOSUI: classification and secondary structure prediction system for membrane proteins [J].

Hirokawa, T ;

Boon-Chieng, S ;

Mitaku, S .

BIOINFORMATICS, 1998, 14 (04) :378-379

[5]

Pearson W R, 2000, Methods Mol Biol, V132, P185

[6]

PROMPONAS VJ, 1998, SILICO BIOL, P1

[7]

ROST B, 1996, REFINING NEURAL NETW, P192

[8]

SHIMIZU T, 1994, GEN INF WORKSH, P148

[9] IDENTIFICATION OF COMMON MOLECULAR SUBSEQUENCES [J].

SMITH, TF ;

WATERMAN, MS .

JOURNAL OF MOLECULAR BIOLOGY, 1981, 147 (01) :195-197

[10]

SONNHAMMER ELL, 1988, HIDDEN MARKOV MODEL, P175

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