E-state modeling of corticosteroids binding affinity validation of model for small data set

被引:45
作者
Maw, HH [1 ]
Hall, LH [1 ]
机构
[1] Eastern Nazarene Coll, Dept Chem, Quincy, MA 02170 USA
来源
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES | 2001年 / 41卷 / 05期
关键词
D O I
10.1021/ci010037i
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Data for 31 steroids binding to the corticosteroid binding globulin (CBG) were modeled using E-state molecular structure descriptors and a kappa shape index. Both E-state and hydrogen E-state descriptors appear in the model in atom-level and atom-type descriptors. A four-variable model is obtained that is statistically satisfactory: r(2) = 0.81, s = 0.51; r(press)(2) = 0.72; s(press) 0.62. Structure interpretation is given for each variable in the model. A leave-group-out (LGO) approach to model-validation is presented in which each observation is removed from the data set three times in random groups of 20% of the whole data set. The average of the resulting predicted values constitutes consensus predictions for these data for which r(LOO)(2) = 0.70. These collective results support the claim that the E-state model may be useful for prediction of pK binding values for new compounds.
引用
收藏
页码:1248 / 1254
页数:7
相关论文
共 36 条
[1]   Antenatal glucocorticoid treatment and cystic periventricular leukomalacia in very premature infants [J].
Baud, O ;
Foix-L'Helias, L ;
Kaminski, M ;
Audibert, F ;
Jarreau, PH ;
Papiernik, E ;
Huon, C ;
Lepercq, J ;
Dehan, M ;
Lacaze-Masmonteil, T .
NEW ENGLAND JOURNAL OF MEDICINE, 1999, 341 (16) :1190-1196
[2]  
*CAMBR, CHEMDR VER 4 5
[3]   The CoMFA steroids as a benchmark dataset for development of 3D QSAR methods [J].
Coats, EA .
PERSPECTIVES IN DRUG DISCOVERY AND DESIGN, 1998, 12 :199-213
[4]   COMPARATIVE MOLECULAR-FIELD ANALYSIS (COMFA) .1. EFFECT OF SHAPE ON BINDING OF STEROIDS TO CARRIER PROTEINS [J].
CRAMER, RD ;
PATTERSON, DE ;
BUNCE, JD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1988, 110 (18) :5959-5967
[5]   QSAR modeling with the electrotopological state indices: Corticosteroids [J].
de Gregorio, C ;
Kier, LB ;
Hall, LH .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1998, 12 (06) :557-561
[6]  
FOYE WO, 1989, PRINCIPLES MED CHEM, P433
[7]   STRUCTURE-ACTIVITY-RELATIONSHIPS FROM MOLECULAR SIMILARITY-MATRICES [J].
GOOD, AC ;
SO, SS ;
RICHARDS, WG .
JOURNAL OF MEDICINAL CHEMISTRY, 1993, 36 (04) :433-438
[8]   Modeling antileukemic activity of carboquinones with electrotopological state and chi indices [J].
Gough, JD ;
Hall, LH .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1999, 39 (02) :356-361
[9]  
Gough JD, 1999, ENVIRON TOXICOL CHEM, V18, P1069, DOI 10.1897/1551-5028(1999)018&lt
[10]  
1069:MTTOAH&gt