Neuromorphometric characterization with shape functionals

被引:15
作者
Barbosa, MS
Costa, LD
Bernardes, ED
机构
[1] Univ Sao Paulo, GII IFSC, Cybernet Vis Res Grp, BR-13560970 Sao Carlos, SP, Brazil
[2] Univ Sao Paulo, Dept Fis & Ciencia Mat, BR-13560970 Sao Carlos, SP, Brazil
来源
PHYSICAL REVIEW E | 2003年 / 67卷 / 06期
基金
巴西圣保罗研究基金会;
关键词
D O I
10.1103/PhysRevE.67.061910
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
This work presents a procedure to extract morphological information from neuronal cells based on the variation of shape functionals as the cell geometry undergoes a dilation through a wide interval of spatial scales. The targeted shapes are alpha and beta cat retinal ganglion cells, which are characterized by different ranges of dendritic field diameter. Image functionals are expected to act as descriptors of the shape, gathering relevant geometric and topological features of the complex cell form. We present a comparative study of classification performance of additive shape descriptors, namely, Minkowski functionals, and the nonadditive multiscale fractal. We found that the proposed measures perform efficiently the task of identifying the two main classes alpha and beta based solely on scale invariant information, while also providing intraclass morphological assessment.
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页数:7
相关论文
共 27 条
[1]  
ASCOLI G, 2002, COMPUTATIONAL NEUROA, P49
[2]   Neuroanatomical algorithms for dendritic modelling [J].
Ascoli, GA .
NETWORK-COMPUTATION IN NEURAL SYSTEMS, 2002, 13 (03) :247-260
[3]  
BOYCOTT BB, 1974, J PHYSIOL-LONDON, V240, P402
[4]   Application and assessment of multiscale bending energy for morphometric characterization of neural cells [J].
Cesar, RM ;
Costa, LD .
REVIEW OF SCIENTIFIC INSTRUMENTS, 1997, 68 (05) :2177-2186
[5]   Neural cell classification by Wavelets and multiscale curvature [J].
Cesar Jr. R.M. ;
Costa L.D.F. .
Biological Cybernetics, 1998, 79 (4) :347-360
[6]   Morphologically realistic neural networks [J].
Coelho, RC ;
Costa, LD .
THIRD IEEE INTERNATIONAL CONFERENCE ON ENGINEERING OF COMPLEX COMPUTER SYSTEMS, PROCEEDINGS, 1997, :223-228
[7]   A shape analysis framework for neuromorphometry [J].
Costa, LD ;
Manoel, ETM ;
Faucereau, F ;
Chelly, J ;
van Pelt, J ;
Ramakers, G .
NETWORK-COMPUTATION IN NEURAL SYSTEMS, 2002, 13 (03) :283-310
[8]   Robust skeletonization through exact Euclidean distance transform and its application to neuromorphometry [J].
Costa, LD .
REAL-TIME IMAGING, 2000, 6 (06) :415-431
[9]   Optimized approach to multiscale skeleton generation [J].
Costa, LD ;
Manoel, ETM .
OPTICAL ENGINEERING, 2001, 40 (09) :1752-1753
[10]  
Costa LD, 1999, J COMP NEUROL, V404, P33