A 5.8S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution

被引：57

作者：

Cullings, KW

Vogler, DR

机构：

[1] NASA, Ames Res Ctr, Moffett Field, CA 94035 USA

[2] San Francisco State Univ, Dept Biol, San Francisco, CA 94132 USA

来源：

MOLECULAR ECOLOGY | 1998年 / 7卷 / 07期

关键词：

5.8S rRNA; DNA database; DNA sequencing PCR;

D O I：

10.1046/j.1365-294x.1998.00409.x

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

We compiled a 5.8S nuclear ribosomal gene sequence database for animals, plants, and fungi using both newly generated and GenBank sequences. We demonstrate the utility of this database as an internal check to determine whether the target organism and not a contaminant has been sequenced, as a diagnostic tool for ecologists and evolutionary biologists to determine the placement of asexual fungi within larger taxonomic groups, and as a tool to help identify fungi that form ectomycorrhizae.

引用

页码：919 / 923

页数：5

共 26 条

[1] Relationships among pathogenic and nonpathogenic isolates of Fusarium oxysporum based on the partial sequence of the intergenic spacer region of the ribosomal DNA [J].

Appel, DJ ;

Gordon, TR .

MOLECULAR PLANT-MICROBE INTERACTIONS, 1996, 9 (02) :125-138

[2] GASTROSUILLUS-LARICINUS IS A RECENT DERIVATIVE OF SUILLUS-GREVILLEI - MOLECULAR EVIDENCE [J].

BAURA, G ;

SZARO, TM ;

BRUNS, TD .

MYCOLOGIA, 1992, 84 (04) :592-597

[3] Loculoascomycete origins and evolution of filamentous ascomycete morphology based on 18S rRNA gene sequence data [J].

Berbee, ML .

MOLECULAR BIOLOGY AND EVOLUTION, 1996, 13 (03) :462-470

[4]

BRUNS TD, 1991, ANNU REV ECOL SYST, V22, P525, DOI 10.1146/annurev.es.22.110191.002521

[5] A sequence database for the identification of ectomycorrhizal basidiomycetes by phylogenetic analysis [J].

Bruns, TD ;

Szaro, TM ;

Gardes, M ;

Cullings, KW ;

Pan, JJ ;

Taylor, DL ;

Horton, TR ;

Kretzer, A ;

Garbelotto, M ;

Li, Y .

MOLECULAR ECOLOGY, 1998, 7 (03) :257-272

[6] Evolutionary Relationships within the Fungi: Analyses of Nuclear Small Subunit rRNA Sequences [J].

Bruns, Thomas D. ;

Vilgalys, Rytas ;

Barns, Susan M. ;

Gonzalez, Dolores ;

Hibbett, David S. ;

Lane, David J. ;

Simon, Luc ;

Stickel, Shawn ;

Szaro, Timothy M. ;

Weisburg, William G. ;

Sogin, Mitchell L. .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 1992, 1 (03) :231-241

[7] MOLECULAR PHYLOGENY OF THE MONOTROPOIDEAE (ERICACEAE) WITH A NOTE ON THE PLACEMENT OF THE PYROLOIDEAE [J].

CULLINGS, K .

JOURNAL OF EVOLUTIONARY BIOLOGY, 1994, 7 (04) :501-516

[8] Design and testing of a plant-specific PCR primer for ecological and evolutionary studies [J].

Cullings, K. W. .

MOLECULAR ECOLOGY, 1992, 1 (04) :233-240

[9] Evolution of extreme specialization within a lineage of ectomycorrhizal epiparasites [J].

Cullings, KW ;

Szaro, TM ;

Bruns, TD .

NATURE, 1996, 379 (6560) :63-66

[10]

FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x

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