The dimeric complex of cyclomaltoheptaose with 1,14-tetradecanedioic acid. Comparison with related complexes

被引:16
作者
Makedonopoulou, S [1 ]
Mavridis, IM [1 ]
机构
[1] NCSR Demokritos, Inst Phys Chem, GR-15310 Athens, Greece
关键词
beta-cyclodextrin; 1,14-tetradecanedioic acid; dimeric inclusion complex; 3]pseudorotaxane;
D O I
10.1016/S0008-6215(01)00207-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The structure of the complex of cyclomaltoheptaose (beta -cyclodextrin, beta CD) with 1,14-tetradecanedioic acid has been determined and refined to a final R = 0.0693 based on 9824 observed reflections. Each diacid molecule threads through two beta CD monomers arranged in dimers thus, forming a [3]pseudorotaxane. The end carboxylic groups of adjacent dimers, far apart and fully hydrated, are associated indirectly through water molecules. The positioning of the carboxylic groups with respect to the beta CD dimer and the H-bonds with water molecules are very similar to these of the corresponding complexes of the diacids with 12 and 13 carbon atoms. The bending in the middle of the aliphatic chain is more prominent, compared to that of the corresponding guests with less carbon atoms, thus the end carboxylic groups stay in the same height of the primary faces of the beta CD dimeric complex. As a consequence of the present structure, more close contacts are observed between calculated H-atoms of the guest and O-atoms of the host inside the cavity. This bending is allowed by the width of the beta CD dimer cavity at the secondary interface region. (C) 2001 Elsevier Science Ltd. All rights reserved.
引用
收藏
页码:213 / 220
页数:8
相关论文
共 14 条
[1]   NMR detection of simultaneous formation of [2]- and [3]pseudorotaxanes in aqueous solution between α-cyclodextrin and linear aliphatic α,ω-amino acids, an α,ω-diamine and an α,ω-diacid of similar length, and comparison with the solid-state structures [J].
Eliadou, K ;
Yannakopoulou, K ;
Rontoyianni, A ;
Mavridis, IM .
JOURNAL OF ORGANIC CHEMISTRY, 1999, 64 (17) :6217-6226
[2]  
JOHNSON CK, 1973, ORNL5138
[3]  
JONES TA, 1993, O VERSION 5 9 MOL MO
[4]   Crystal structures of two forms of a 2:1 cyclomaltohexaose (α-cyclodextrin)/4,4′-biphenyldicarboxylic acid inclusion complex [J].
Kamitori, S ;
Muraoka, S ;
Kondo, S ;
Okuyama, K .
CARBOHYDRATE RESEARCH, 1998, 312 (04) :177-181
[5]   MOLSCRIPT - A PROGRAM TO PRODUCE BOTH DETAILED AND SCHEMATIC PLOTS OF PROTEIN STRUCTURES [J].
KRAULIS, PJ .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1991, 24 :946-950
[6]  
LEBAS G, 1994, SUPRAMOL CHEM, V4, P13
[7]   Organisation of long aliphatic monocarboxylic acids in β-cyclodextrin channels:: crystal structures of the inclusion complexes of tridecanoic acid and (Z)-tetradec-7-enoic acid in β-cyclodextrin [J].
Makedonopoulou, S ;
Mavridis, IM ;
Yannakopoulou, K ;
Papaioannou, J .
CHEMICAL COMMUNICATIONS, 1998, (19) :2133-2134
[8]   The dimeric complex of beta-cyclodextrin with 1,13-tridecanedioic acid [J].
Makedonopoulou, S ;
Tulinsky, A ;
Mavridis, IM .
SUPRAMOLECULAR CHEMISTRY, 1999, 11 (01) :73-81
[9]   Structure of the inclusion complex of β-cyclodextrin with 1,12-dodecanedioic acid using synchrotron radiation data;: a detailed dimeric β-cyclodextrin structure [J].
Makedonopoulou, S ;
Mavridis, IM .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS, 2000, 56 :322-331
[10]   Crystal structures of the inclusion complexes of β-cyclodextrin with aliphatic monoacids tridecanoic acid and (Z)-tetradec-7-enoic acid.: Formation of [3]pseudorotaxanes [J].
Makedonopoulou, S ;
Papaioannou, J ;
Argyroglou, I ;
Mavridis, IM .
JOURNAL OF INCLUSION PHENOMENA AND MACROCYCLIC CHEMISTRY, 2000, 36 (02) :191-215