Structure of CBM4 from Clostridium thermocellum cellulase K

被引:8
作者
Alahuhta, Markus [1 ]
Luo, Yonghua [1 ]
Ding, Shi-You [1 ]
Himmel, Michael E. [1 ]
Lunin, Vladimir V. [1 ]
机构
[1] Natl Renewable Energy Lab, BioSci Ctr, Golden, CO 80401 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2011年 / 67卷
关键词
CARBOHYDRATE-BINDING MODULES;
D O I
10.1107/S1744309111003307
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Here, a 2.0 angstrom resolution X-ray structure of Clostridium thermocellum cellulase K family 4 carbohydrate-binding module (CelK CBM4) is reported. The resulting structure was refined to an R factor of 0.212 and an R-free of 0.274. Structural analysis shows that this new structure is very similar to the previously solved structure of C. thermocellum CbhA CBM4. Most importantly, these data support the previously proposed notion of an extended binding pocket using a novel tryptophan-containing loop that may be highly conserved in clostridial CBM4 proteins.
引用
收藏
页码:527 / 530
页数:4
相关论文
共 13 条
[1]   The Unique Binding Mode of Cellulosomal CBM4 from Clostridium thermocellum Cellobiohydrolase A [J].
Alahuhta, Markus ;
Xu, Qi ;
Bomble, Yannick J. ;
Brunecky, Roman ;
Adney, William S. ;
Ding, Shi-You ;
Himmel, Michael E. ;
Lunin, Vladimir V. .
JOURNAL OF MOLECULAR BIOLOGY, 2010, 402 (02) :374-387
[2]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[3]   From Cellulosomes to Cellulosomics [J].
Bayer, Edward A. ;
Lamed, Raphael ;
White, Bryan A. ;
Flint, Harry J. .
CHEMICAL RECORD, 2008, 8 (06) :364-377
[4]   Carbohydrate-binding modules: fine-tuning polysaccharide recognition [J].
Boraston, AB ;
Bolam, DN ;
Gilbert, HJ ;
Davies, GJ .
BIOCHEMICAL JOURNAL, 2004, 382 (03) :769-781
[5]   MolProbity: all-atom structure validation for macromolecular crystallography [J].
Chen, Vincent B. ;
Arendall, W. Bryan, III ;
Headd, Jeffrey J. ;
Keedy, Daniel A. ;
Immormino, Robert M. ;
Kapral, Gary J. ;
Murray, Laura W. ;
Richardson, Jane S. ;
Richardson, David C. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :12-21
[6]   Coot:: model-building tools for molecular graphics [J].
Emsley, P ;
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132
[7]   ACCURATE BOND AND ANGLE PARAMETERS FOR X-RAY PROTEIN-STRUCTURE REFINEMENT [J].
ENGH, RA ;
HUBER, R .
ACTA CRYSTALLOGRAPHICA SECTION A, 1991, 47 :392-400
[8]   Searching protein structure databases with DaliLite v.3 [J].
Holm, L. ;
Kaariainen, S. ;
Rosenstrom, P. ;
Schenkel, A. .
BIOINFORMATICS, 2008, 24 (23) :2780-2781
[9]   Properties and mutation analysis of the CelK cellulose-binding domain from the Clostridium thermocellum cellulosome [J].
Kataeva, IA ;
Seidel, RD ;
Li, XL ;
Ljungdahl, LG .
JOURNAL OF BACTERIOLOGY, 2001, 183 (05) :1552-1559
[10]   Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions [J].
Krissinel, E ;
Henrick, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2256-2268