Dynamics and thermodynamics of dimerization of parallel G-quadruplexed DNA formed from d(TTAGn) (n=3-5)

被引:83
作者
Kato, Y [1 ]
Ohyama, T [1 ]
Mita, H [1 ]
Yamamoto, Y [1 ]
机构
[1] Univ Tsukuba, Dept Chem, Tsukuba, Ibaraki 3058571, Japan
关键词
D O I
10.1021/ja050191b
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Parallel G-quadruplexes formed from oligonucleotide sequences, d(TTAGn), where n = 3-5, have been shown to form a dimer through end-to-end stacking of 3′-terminal G-tetrads. The monomers and dimers of the G-quadruplexes are in dynamic equilibrium with an exchange rate of ∼1 s-1. A thermodynamic study demonstrated that the dimerization of the G-quadruplexes is largely enthalpic in origin. Copyright © 2005 American Chemical Society.
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页码:9980 / 9981
页数:2
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共 19 条
[1]  
BALAGURUMOORTHY P, 1994, J BIOL CHEM, V269, P21858
[2]   THE MOLECULAR-STRUCTURE OF CENTROMERES AND TELOMERES [J].
BLACKBURN, EH ;
SZOSTAK, JW .
ANNUAL REVIEW OF BIOCHEMISTRY, 1984, 53 :163-194
[3]   A K cation-induced conformational switch within a loop spanning segment of a DNA quadruplex containing G-G-G-C repeats [J].
Bouaziz, S ;
Kettani, A ;
Patel, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 282 (03) :637-652
[4]   Structure of the parallel-stranded DNA quadruplex d(TTAGGGT)4 containing the human telomeric repeat:: evidence for A-tetrad formation from NMR and molecular dynamics simulations [J].
Gavathiotis, E ;
Searle, MS .
ORGANIC & BIOMOLECULAR CHEMISTRY, 2003, 1 (10) :1650-1656
[5]   TELOMERIC DNA OLIGONUCLEOTIDES FORM NOVEL INTRAMOLECULAR STRUCTURES CONTAINING GUANINE GUANINE BASE-PAIRS [J].
HENDERSON, E ;
HARDIN, CC ;
WALK, SK ;
TINOCO, I ;
BLACKBURN, EH .
CELL, 1987, 51 (06) :899-908
[6]   THERMODYNAMICS AND STRUCTURE OF A DNA TETRAPLEX - A SPECTROSCOPIC AND CALORIMETRIC STUDY OF THE TETRAMOLECULAR COMPLEXES OF D(TG3T) AND D(TG3T2G3T) [J].
JIN, RZ ;
GAFFNEY, BL ;
WANG, C ;
JONES, RA ;
BRESLAUER, KJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (18) :8832-8836
[7]   Solution structure of a Na cation stabilized DNA quadruplex containing G•G•G•G and G•C•G•C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA [J].
Kettani, A ;
Bouaziz, S ;
Gorin, A ;
Zhao, H ;
Jones, RA ;
Patel, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 282 (03) :619-636
[8]   AMIDE HYDROGEN-EXCHANGE RATES OF PEPTIDES IN H2O SOLUTION BY H-1 NUCLEAR MAGNETIC-RESONANCE TRANSFER OF SOLVENT SATURATION METHOD - CONFORMATIONS OF OXYTOCIN AND LYSINE VASOPRESSIN IN AQUEOUS-SOLUTION [J].
KRISHNA, NR ;
HUANG, DH ;
GLICKSON, JD ;
ROWAN, R ;
WALTER, R .
BIOPHYSICAL JOURNAL, 1979, 26 (03) :345-366
[9]   Formation of an interlocked quadruplex dimer by d(GGGT) [J].
Krishnan-Ghosh, Y ;
Liu, DS ;
Balasubramanian, S .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (35) :11009-11016
[10]   G-DNA - A TWICE-FOLDED DNA-STRUCTURE ADOPTED BY SINGLE-STRANDED OLIGO(DG) AND ITS IMPLICATIONS FOR TELOMERES [J].
PANYUTIN, IG ;
KOVALSKY, OI ;
BUDOWSKY, EI ;
DICKERSON, RE ;
RIKHIREV, ME ;
LIPANOV, AA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1990, 87 (03) :867-870