共 33 条
Comparative genomics
被引:214
作者:

Hardison, RC
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Ctr Comparat Genom & Bioinformat, University Pk, PA 16802 USA Penn State Univ, Ctr Comparat Genom & Bioinformat, University Pk, PA 16802 USA
机构:
[1] Penn State Univ, Ctr Comparat Genom & Bioinformat, University Pk, PA 16802 USA
来源:
关键词:
D O I:
10.1371/journal.pbio.0000058
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
[No abstract available]
引用
收藏
页码:156 / 160
页数:5
相关论文
共 33 条
[1]
SLAM: Cross-species gene finding and alignment with a generalized pair hidden Markov model
[J].
Alexandersson, M
;
Cawley, S
;
Pachter, L
.
GENOME RESEARCH,
2003, 13 (03)
:496-502

Alexandersson, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Dept Math, Berkeley, CA 94720 USA

Cawley, S
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Dept Math, Berkeley, CA 94720 USA

Pachter, L
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Math, Berkeley, CA 94720 USA Univ Calif Berkeley, Dept Math, Berkeley, CA 94720 USA
[2]
Recent segmental duplications in the human genome
[J].
Bailey, JA
;
Gu, ZP
;
Clark, RA
;
Reinert, K
;
Samonte, RV
;
Schwartz, S
;
Adams, MD
;
Myers, EW
;
Li, PW
;
Eichler, EE
.
SCIENCE,
2002, 297 (5583)
:1003-1007

Bailey, JA
论文数: 0 引用数: 0
h-index: 0
机构: Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA

Gu, ZP
论文数: 0 引用数: 0
h-index: 0
机构: Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA

Clark, RA
论文数: 0 引用数: 0
h-index: 0
机构: Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA

Reinert, K
论文数: 0 引用数: 0
h-index: 0
机构: Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA

Samonte, RV
论文数: 0 引用数: 0
h-index: 0
机构: Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA

Schwartz, S
论文数: 0 引用数: 0
h-index: 0
机构: Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA

Adams, MD
论文数: 0 引用数: 0
h-index: 0
机构: Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA

Myers, EW
论文数: 0 引用数: 0
h-index: 0
机构: Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA

Li, PW
论文数: 0 引用数: 0
h-index: 0
机构: Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA

Eichler, EE
论文数: 0 引用数: 0
h-index: 0
机构:
Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA Case Western Reserve Univ, Sch Med, Ctr Computat Genom, Dept Genet, Cleveland, OH 44106 USA
[3]
Human and mouse gene structure: Comparative analysis and application to exon prediction
[J].
Batzoglou, S
;
Pachter, L
;
Mesirov, JP
;
Berger, B
;
Lander, ES
.
GENOME RESEARCH,
2000, 10 (07)
:950-958

Batzoglou, S
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Comp Sci Lab, Cambridge, MA 02139 USA

Pachter, L
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Comp Sci Lab, Cambridge, MA 02139 USA

Mesirov, JP
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Comp Sci Lab, Cambridge, MA 02139 USA

Berger, B
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Comp Sci Lab, Cambridge, MA 02139 USA

Lander, ES
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Math, Berkeley, CA 94720 USA MIT, Comp Sci Lab, Cambridge, MA 02139 USA
[4]
Phylogenetic shadowing of primate sequences to find functional regions of the human genome
[J].
Boffelli, D
;
McAuliffe, J
;
Ovcharenko, D
;
Lewis, KD
;
Ovcharenko, I
;
Pachter, L
;
Rubin, EM
.
SCIENCE,
2003, 299 (5611)
:1391-1394

Boffelli, D
论文数: 0 引用数: 0
h-index: 0
机构: USDA, Joint Genome Inst, Walnut Creek, CA 94598 USA

McAuliffe, J
论文数: 0 引用数: 0
h-index: 0
机构: USDA, Joint Genome Inst, Walnut Creek, CA 94598 USA

Ovcharenko, D
论文数: 0 引用数: 0
h-index: 0
机构: USDA, Joint Genome Inst, Walnut Creek, CA 94598 USA

Lewis, KD
论文数: 0 引用数: 0
h-index: 0
机构: USDA, Joint Genome Inst, Walnut Creek, CA 94598 USA

Ovcharenko, I
论文数: 0 引用数: 0
h-index: 0
机构: USDA, Joint Genome Inst, Walnut Creek, CA 94598 USA

Pachter, L
论文数: 0 引用数: 0
h-index: 0
机构: USDA, Joint Genome Inst, Walnut Creek, CA 94598 USA

Rubin, EM
论文数: 0 引用数: 0
h-index: 0
机构:
USDA, Joint Genome Inst, Walnut Creek, CA 94598 USA USDA, Joint Genome Inst, Walnut Creek, CA 94598 USA
[5]
Ensembl 2002: accommodating comparative genomics
[J].
Clamp, M
;
Andrews, D
;
Barker, D
;
Bevan, P
;
Cameron, G
;
Chen, Y
;
Clark, L
;
Cox, T
;
Cuff, J
;
Curwen, V
;
Down, T
;
Durbin, R
;
Eyras, E
;
Gilbert, J
;
Hammond, M
;
Hubbard, T
;
Kasprzyk, A
;
Keefe, D
;
Lehvaslaiho, H
;
Iyer, V
;
Melsopp, C
;
Mongin, E
;
Pettett, R
;
Potter, S
;
Rust, A
;
Schmidt, E
;
Searle, S
;
Slater, G
;
Smith, J
;
Spooner, W
;
Stabenau, A
;
Stalker, J
;
Stupka, E
;
Ureta-Vidal, A
;
Vastrik, I
;
Birney, E
.
NUCLEIC ACIDS RESEARCH,
2003, 31 (01)
:38-42

Clamp, M
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Andrews, D
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Barker, D
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Bevan, P
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Cameron, G
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Chen, Y
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Clark, L
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Cox, T
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Cuff, J
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Curwen, V
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Down, T
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Durbin, R
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Eyras, E
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Gilbert, J
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Hammond, M
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Hubbard, T
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Kasprzyk, A
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Keefe, D
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Lehvaslaiho, H
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Iyer, V
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Melsopp, C
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Mongin, E
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Pettett, R
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Potter, S
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Rust, A
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Schmidt, E
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Searle, S
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Slater, G
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Smith, J
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Spooner, W
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Stabenau, A
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Stalker, J
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Stupka, E
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Ureta-Vidal, A
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Vastrik, I
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England

Birney, E
论文数: 0 引用数: 0
h-index: 0
机构: Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England
[6]
Finding functional features in Saccharomyces genomes by phylogenetic footprinting
[J].
Cliften, P
;
Sudarsanam, P
;
Desikan, A
;
Fulton, L
;
Fulton, B
;
Majors, J
;
Waterston, R
;
Cohen, BA
;
Johnston, M
.
SCIENCE,
2003, 301 (5629)
:71-76

Cliften, P
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Sudarsanam, P
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Desikan, A
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Fulton, L
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Fulton, B
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Majors, J
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Waterston, R
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Cohen, BA
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Johnston, M
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA
[7]
Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis
[J].
Cliften, PF
;
Hillier, LW
;
Fulton, L
;
Graves, T
;
Miner, T
;
Gish, WR
;
Waterston, RH
;
Johnston, M
.
GENOME RESEARCH,
2001, 11 (07)
:1175-1186

Cliften, PF
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Hillier, LW
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Fulton, L
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Graves, T
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Miner, T
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Gish, WR
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Waterston, RH
论文数: 0 引用数: 0
h-index: 0
机构: Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA

Johnston, M
论文数: 0 引用数: 0
h-index: 0
机构:
Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA
[8]
A vision for the future of genomics research
[J].
Collins, FS
;
Green, ED
;
Guttmacher, AE
;
Guyer, MS
.
NATURE,
2003, 422 (6934)
:835-847

Collins, FS
论文数: 0 引用数: 0
h-index: 0
机构:
NHGRI, NIH, Bethesda, MD 20892 USA NHGRI, NIH, Bethesda, MD 20892 USA

Green, ED
论文数: 0 引用数: 0
h-index: 0
机构:
NHGRI, NIH, Bethesda, MD 20892 USA NHGRI, NIH, Bethesda, MD 20892 USA

Guttmacher, AE
论文数: 0 引用数: 0
h-index: 0
机构:
NHGRI, NIH, Bethesda, MD 20892 USA NHGRI, NIH, Bethesda, MD 20892 USA

Guyer, MS
论文数: 0 引用数: 0
h-index: 0
机构:
NHGRI, NIH, Bethesda, MD 20892 USA NHGRI, NIH, Bethesda, MD 20892 USA
[9]
Strategies and tools for whole-genome alignments
[J].
Couronne, O
;
Poliakov, A
;
Bray, N
;
Ishkhanov, T
;
Ryaboy, D
;
Rubin, E
;
Pachter, L
;
Dubchak, I
.
GENOME RESEARCH,
2003, 13 (01)
:73-80

Couronne, O
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA

Poliakov, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA

Bray, N
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA

Ishkhanov, T
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA

Ryaboy, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA

Rubin, E
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA

Pachter, L
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA

Dubchak, I
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA
[10]
Distinguishing regulatory DNA from neutral sites
[J].
Elnitski, L
;
Hardison, RC
;
Li, J
;
Yang, S
;
Kolbe, D
;
Eswara, P
;
O'Connor, MJ
;
Schwartz, S
;
Miller, W
;
Chiaromonte, F
.
GENOME RESEARCH,
2003, 13 (01)
:64-72

Elnitski, L
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Dept Stat, University Pk, PA 16802 USA

Hardison, RC
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Dept Stat, University Pk, PA 16802 USA

Li, J
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Dept Stat, University Pk, PA 16802 USA

Yang, S
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Dept Stat, University Pk, PA 16802 USA

Kolbe, D
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Dept Stat, University Pk, PA 16802 USA

Eswara, P
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Dept Stat, University Pk, PA 16802 USA

O'Connor, MJ
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Dept Stat, University Pk, PA 16802 USA

Schwartz, S
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Dept Stat, University Pk, PA 16802 USA

Miller, W
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Dept Stat, University Pk, PA 16802 USA

Chiaromonte, F
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Stat, University Pk, PA 16802 USA Penn State Univ, Dept Stat, University Pk, PA 16802 USA