Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing

被引:322
作者
Macbeth, MR
Schubert, HL
VanDemark, AP
Lingam, AT
Hill, CP [1 ]
Bass, BL
机构
[1] Univ Utah, Dept Biochem, Salt Lake City, UT 84132 USA
[2] Univ Utah, Howard Hughes Med Inst, Salt Lake City, UT 84132 USA
关键词
D O I
10.1126/science.1113150
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We report the crystal structure of the catalytic domain of human ADAR2, an RNA editing enzyme, at 1.7 angstrom resolution. The structure reveals a zinc ion in the active site and suggests how the substrate adenosine is recognized. Unexpectedly, inositol hexakisphosphate (IP6) is buried within the enzyme core, contributing to the protein fold. Although there are no reports that adenosine deaminases that act on RNA (ADARs) require a cofactor, we show that IP6 is required for activity. Amino acids that coordinate IP6 in the crystal structure are conserved in some adenosine deaminases that act on transfer RNA (tRNA) (ADATs), related enzymes that edit tRNA. Indeed, IP6 is also essential for in vivo and in vitro deamination of adenosine 37 of tRNA(ala) by ADAT1.
引用
收藏
页码:1534 / 1539
页数:6
相关论文
共 41 条
[1]  
[Anonymous], 1998, MODULATION ROLE MODI
[2]   STRUCTURE OF INOSITOL HEXAPHOSPHATE-HUMAN DEOXYHEMOGLOBIN COMPLEX [J].
ARNONE, A ;
PERUTZ, MF .
NATURE, 1974, 249 (5452) :34-36
[3]   RNA editing by adenosine deaminases that act on RNA [J].
Bass, BL .
ANNUAL REVIEW OF BIOCHEMISTRY, 2002, 71 :817-846
[4]   CYTIDINE DEAMINASE - THE 2-CENTER-DOT-3-ANGSTROM CRYSTAL-STRUCTURE OF AN ENZYME - TRANSITION-STATE ANALOG COMPLEX [J].
BETTS, L ;
XIANG, SB ;
SHORT, SA ;
WOLFENDEN, R ;
CARTER, CW .
JOURNAL OF MOLECULAR BIOLOGY, 1994, 235 (02) :635-656
[5]   Regulation of serotonin-2C receptor G-protein coupling by RNA editing [J].
Burns, CM ;
Chu, H ;
Rueter, SM ;
Hutchinson, LK ;
Canton, H ;
SandersBush, E ;
Emeson, RB .
NATURE, 1997, 387 (6630) :303-308
[6]   Cytidine deaminases from B-subtilis and E-coli:: Compensating effects of changing zinc coordination and quaternary structure [J].
Carlow, DC ;
Carter, CW ;
Mejlhede, N ;
Neuhard, J ;
Wolfenden, R .
BIOCHEMISTRY, 1999, 38 (38) :12258-12265
[7]   A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains [J].
Chen, CX ;
Cho, DSC ;
Wang, QD ;
Lai, F ;
Carter, KC ;
Nishikura, K .
RNA, 2000, 6 (05) :755-767
[8]   AdoMet-dependent methylation, DNA methyltransferases and base flipping [J].
Cheng, XD ;
Roberts, RJ .
NUCLEIC ACIDS RESEARCH, 2001, 29 (18) :3784-3795
[9]   Molecular architecture and functional model of the endocytic AP2 complex [J].
Collins, BM ;
McCoy, AJ ;
Kent, HM ;
Evans, PR ;
Owen, DJ .
CELL, 2002, 109 (04) :523-535
[10]   Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2 [J].
Gerber, A ;
Grosjean, H ;
Melcher, T ;
Keller, W .
EMBO JOURNAL, 1998, 17 (16) :4780-4789