Molecular dynamics simulation study of N-methylacetamide in water.: II.: Two-dimensional infrared pump-probe spectra

被引:176
作者
Kwac, K [1 ]
Cho, MH
机构
[1] Korea Univ, Dept Chem, Seoul 136701, South Korea
[2] Korea Univ, Ctr Multidimens Spect, Div Chem & Mol Engn, Seoul 136701, South Korea
关键词
D O I
10.1063/1.1580808
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A theoretical description of two-dimensional (2D) IR pump-probe spectroscopy of a three-level system is presented by taking into account the system-bath interaction. By using the correlation function of the fluctuating amide I mode frequency of N-methylacetamide in D2O, which was obtained by carrying out both ab initio calculations and MD simulations, the time-resolved 2D pump-probe spectra as a function of pump-probe pulse delay time are calculated and compared with experiment. We found that the vibrational dephasing becomes homogeneous on the 2 ps time scale, which is a bit faster than the experimental result. It is theoretically shown that the degree of slant of 2D contours is linearly proportional to the correlation function of the fluctuating amide I mode frequency. Consequently, it is suggested that the 2D IR pump-probe spectroscopy can provide a direct information on the vibrational frequency fluctuation dynamics and on the magnitude of static inhomogeneity. (C) 2003 American Institute of Physics.
引用
收藏
页码:2256 / 2263
页数:8
相关论文
共 37 条
[1]   13C isotope labeling of hydrophobic peptides.: Origin of the anomalous intensity distribution in the infrared amide I spectral region of β-sheet structures [J].
Brauner, JW ;
Dugan, C ;
Mendelsohn, R .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (04) :677-683
[2]   Amide I vibrational modes in glycine dipeptide analog:: Ab initio calculation studies [J].
Cha, SY ;
Ham, SH ;
Cho, MH .
JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (02) :740-750
[3]  
CHO M, 1999, ADV MULTIPHOTON PROC, V12, P229
[4]   Ultrafast vibrational spectroscopy in condensed phases [J].
Cho, MH .
PHYSCHEMCOMM, 2002, 5 :40-58
[5]   Nonlinear response functions for the three-dimensional spectroscopies [J].
Cho, MH .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (10) :4424-4437
[6]   The integrated photon echo and solvation dynamics [J].
Cho, MH ;
Yu, JY ;
Joo, TH ;
Nagasawa, Y ;
Passino, SA ;
Fleming, GR .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (29) :11944-11953
[7]   Inter-peptide interaction and delocalization of amide I vibrational excitons in myoglobin and flavodoxin [J].
Choi, JH ;
Ham, S ;
Cho, M .
JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (14) :6821-6832
[8]   SPECTROSCOPIC STUDIES OF THE SOLVATION OF AMIDES WITH N-H GROUPS .1. THE CARBONYL GROUP [J].
EATON, G ;
SYMONS, MCR ;
RASTOGI, PP .
JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS I, 1989, 85 :3257-3271
[9]   Correlation between electronic and molecular structure distortions and vibrational properties.: II.: Amide I modes of NMA-nD2O complexes [J].
Ham, S ;
Kim, JH ;
Lee, H ;
Cho, MH .
JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (08) :3491-3498
[10]   Amide I modes in the N-methylacetamide dimer and glycine dipeptide analog:: Diagonal force constants [J].
Ham, S ;
Cho, M .
JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (15) :6915-6922