Towards crystal structure prediction of complex organic compounds - a report on the fifth blind test

被引:358
作者
Bardwell, David A. [1 ]
Adjiman, Claire S. [2 ]
Arnautova, Yelena A. [3 ]
Bartashevich, Ekaterina [4 ]
Boerrigter, Stephan X. M.
Braun, Doris E. [5 ]
Cruz-Cabeza, Aurora J. [1 ,6 ,7 ]
Day, Graeme M. [8 ]
Della Valle, Raffaele G. [9 ]
Desiraju, Gautam R.
van Eijck, Bouke P. [10 ]
Facelli, Julio C. [11 ,12 ]
Ferraro, Marta B. [13 ]
Grillo, Damian [13 ]
Habgood, Matthew [5 ]
Hofmann, Detlef W. M.
Hofmann, Fridolin [14 ]
Jose, K. V. Jovan [15 ]
Karamertzanis, Panagiotis G. [2 ]
Kazantsev, Andrei V. [2 ]
Kendrick, John [16 ]
Kuleshova, Liudmila N.
Leusen, Frank J. J. [16 ]
Maleev, Andrey V. [17 ]
Misquitta, Alston J.
Mohamed, Sharmarke [5 ]
Needs, Richard J.
Neumann, Marcus A.
Nikylov, Denis [4 ]
Orendt, Anita M. [11 ]
Pal, Rumpa
Pantelides, Constantinos C. [2 ]
Pickard, Chris J. [18 ]
Price, Louise S. [5 ]
Price, Sarah L. [5 ]
Scheraga, Harold A. [3 ]
van de Streek, Jacco
Thakur, Tejender S.
Tiwari, Siddharth
Venuti, Elisabetta [9 ]
Zhitkov, Ilia K. [17 ]
机构
[1] Cambridge Crystallog Data Ctr, Cambridge CB2 1EZ, England
[2] Univ London Imperial Coll Sci Technol & Med, London SW7 2AZ, England
[3] Cornell Univ, Ithaca, NY 14853 USA
[4] S Ural State Univ, Lenina, Russia
[5] UCL, Dept Chem, London WC1E 6BT, England
[6] Univ Cambridge, Univ Chem Lab, Pfizer Inst Pharmaceut Mat Sci, Cambridge CB2 1TN, England
[7] Univ Amsterdam, NL-1012 WX Amsterdam, Netherlands
[8] Univ Cambridge, Dept Chem, Cambridge CB2 1TN, England
[9] Univ Bologna, I-40126 Bologna, Italy
[10] Univ Utrecht, NL-3508 TC Utrecht, Netherlands
[11] Univ Utah, Ctr High Performance Comp, Salt Lake City, UT 84112 USA
[12] Univ Utah, Dept Biomed Informat, Salt Lake City, UT 84112 USA
[13] Univ Buenos Aires, RA-1053 Buenos Aires, DF, Argentina
[14] Univ Erlangen Nurnberg, D-8520 Erlangen, Germany
[15] Ruhr Univ Bochum, Bochum, Germany
[16] Univ Bradford, Bradford BD7 1DP, W Yorkshire, England
[17] Vladimir State Humanitarian Univ, Vladimir, Russia
[18] UCL, Dept Phys & Astron, London WC1E 6BT, England
基金
英国工程与自然科学研究理事会; 奥地利科学基金会; 美国国家科学基金会;
关键词
SUPRAMOLECULAR SYNTHON APPROACH; LATTICE ENERGY MINIMIZATION; HYDROGEN-BONDED MOLECULES; FLEXIBLE MOLECULES; GENERATION; PROGRESS;
D O I
10.1107/S0108768111042868
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in order to evaluate the ability of the current computational methods to predict the crystal structures of the six organic molecules chosen as targets for this blind test. The first four targets, two rigid molecules, one semi-flexible molecule and a 1: 1 salt, matched the criteria for the targets from CSP2007, while the last two targets belonged to two new challenging categories - a larger, much more flexible molecule and a hydrate with more than one polymorph. Each group submitted three predictions for each target it attempted. There was at least one successful prediction for each target, and two groups were able to successfully predict the structure of the large flexible molecule as their first place submission. The results show that while not as many groups successfully predicted the structures of the three smallest molecules as in CSP2007, there is now evidence that methodologies such as dispersion-corrected density functional theory (DFT-D) are able to reliably do so. The results also highlight the many challenges posed by more complex systems and show that there are still issues to be overcome.
引用
收藏
页码:535 / 551
页数:17
相关论文
共 76 条
  • [1] The Cambridge Structural Database: a quarter of a million crystal structures and rising
    Allen, FH
    [J]. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1): : 380 - 388
  • [2] A study of the known and hypothetical crystal structures of pyridine: why are there four molecules in the asymmetric unit cell?
    Anghel, AT
    Day, GM
    Price, SL
    [J]. CRYSTENGCOMM, 2002, 4 : 348 - 355
  • [3] Crystal Structure Prediction and Isostructurality of Three Small Molecules
    Asmadi, Aldi
    Kendrick, John
    Leusen, Frank J. J.
    [J]. CHEMISTRY-A EUROPEAN JOURNAL, 2010, 16 (42) : 12701 - 12709
  • [4] Crystal structure prediction and isostructurality of three small organic halogen compounds
    Asmadi, Aldi
    Kendrick, John
    Leusen, Frank J. J.
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2010, 12 (30) : 8571 - 8579
  • [5] Revisiting the Blind Tests in Crystal Structure Prediction: Accurate Energy Ranking of Molecular Crystals
    Asmadi, Aldi
    Neumann, Marcus A.
    Kendrick, John
    Girard, Pascale
    Perrin, Marc-Antoine
    Leusen, Frank J. J.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (51) : 16303 - 16313
  • [6] A distributed computing method for crystal structure prediction of flexible molecules:: An application to N-(2-dimethyl-4,5-dinitrophenyl) acetamide
    Bazterra, Victor E.
    Thorley, Matthew
    Ferraro, Marta B.
    Facelli, Julio C.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2007, 3 (01) : 201 - 209
  • [7] The errors in lattice energy minimisation studies: sensitivity to experimental variations in the molecular structure of paracetamol
    Beyer, Theresa
    Price, Sarah L.
    [J]. CRYSTENGCOMM, 2000, (34): : 183 - 190
  • [8] Blake A., 2010, COMMUNICATION
  • [9] Which, if any, hydrates will crystallise? Predicting hydrate formation of two dihydroxybenzoic acids
    Braun, Doris E.
    Karamertzanis, Panagiotis G.
    Price, Sarah L.
    [J]. CHEMICAL COMMUNICATIONS, 2011, 47 (19) : 5443 - 5445
  • [10] Britton D., 2010, COMMUNICATION